PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35926_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 154aa    MW: 17851.9 Da    PI: 7.6437
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35926_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-201970256
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                +y+GVr+++ +g++++eIrdp+ +g  +r +lg+f+taeeAa+a+++a+ +l+g+
  Cotton_A_35926_BGI-A2_v1.0 19 RYRGVRRRP-WGKYASEIRDPTRQG--ARLWLGTFDTAEEAARAYDRAAFNLRGH 70
                                6********.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-241978IPR016177DNA-binding domain
SMARTSM003801.6E-351983IPR001471AP2/ERF domain
PROSITE profilePS5103224.751977IPR001471AP2/ERF domain
CDDcd000181.04E-281977No hitNo description
PfamPF008471.2E-141970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-321978IPR001471AP2/ERF domain
PRINTSPR003678.0E-122031IPR001471AP2/ERF domain
PRINTSPR003678.0E-124359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEDPNKIKEK EEKGKEEVRY RGVRRRPWGK YASEIRDPTR QGARLWLGTF DTAEEAARAY  60
DRAAFNLRGH MAILNFPREY YAQLMGGSSS SPSPSPYLYP YPSSGNVHKS FDKGSSSSGE  120
QQKQVFEFEY LDDKVLEELL ETEDEKIKKK MLRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-32141359114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624868.11e-111PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-49ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8IEF41e-107A0A1U8IEF4_GOSHI; ethylene-responsive transcription factor ERF098-like
STRINGGorai.011G172800.14e-70(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-37ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]