PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35903_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24605 Da    PI: 9.808
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35903_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF953.3e-30959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                krienk+nr vtfskRr g++KKA+ELSvLCdaeva+i+fs++ klyeys+
  Cotton_A_35903_BGI-A2_v1.0  9 KRIENKINRRVTFSKRRSGLFKKAHELSVLCDAEVALIVFSHKWKLYEYST 59
                                79***********************************************96 PP
2K-box107.61.5e-35821748100
                       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                                 ++e + + +++ e+++Lk+++e Lq+++Rh++GedL++LslkeLq+LeqqL+++lk+iR++Kn+ll e+i+elq+kek+++e+
  Cotton_A_35903_BGI-A2_v1.0  82 ATEPESQGEWSVEYNRLKAKVELLQKNHRHYMGEDLDPLSLKELQNLEQQLDTALKHIRARKNQLLNESISELQRKEKAIKEQ 164
                                 555666789************************************************************************** PP

                       K-box  91 nkaLrkklee 100
                                 n +L ++++e
  Cotton_A_35903_BGI-A2_v1.0 165 NAMLANQIKE 174
                                 *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.721161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-38160IPR002100Transcription factor, MADS-box
CDDcd002656.05E-40273No hitNo description
SuperFamilySSF554554.19E-34290IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014866.1E-3087172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.07688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRRVT FSKRRSGLFK KAHELSVLCD AEVALIVFSH KWKLYEYSTD  60
SCMEKILERY ERHYYAERHL VATEPESQGE WSVEYNRLKA KVELLQKNHR HYMGEDLDPL  120
SLKELQNLEQ QLDTALKHIR ARKNQLLNES ISELQRKEKA IKEQNAMLAN QIKEREKTVA  180
RQSQWGQQDN GLNTSSFVLP HPHPSLNIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19173172MEF2C
5f28_B2e-19173172MEF2C
5f28_C2e-19173172MEF2C
5f28_D2e-19173172MEF2C
6byy_A2e-19179176MEF2 CHIMERA
6byy_B2e-19179176MEF2 CHIMERA
6byy_C2e-19179176MEF2 CHIMERA
6byy_D2e-19179176MEF2 CHIMERA
6bz1_A2e-19179176MEF2 CHIMERA
6bz1_B2e-19179176MEF2 CHIMERA
6bz1_C2e-19179176MEF2 CHIMERA
6bz1_D2e-19179176MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556600.0KC155660.1 Gossypium hirsutum MADS box protein MADS65 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636700.11e-154PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-119AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A1U8HSY71e-151A0A1U8HSY7_GOSHI; truncated transcription factor CAULIFLOWER A-like isoform X1
TrEMBLA0A2P5W3J41e-151A0A2P5W3J4_GOSBA; Uncharacterized protein
TrEMBLU5L2X51e-151U5L2X5_GOSHI; MADS box protein MADS65
STRINGGorai.005G147200.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-101MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]