PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35841_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 279aa    MW: 32348.5 Da    PI: 9.2887
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35841_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.15.3e-202168148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd+ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
  Cotton_A_35841_BGI-A2_v1.0 21 KGPWTAEEDKLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 68
                                79********************************************97 PP
2Myb_DNA-binding52.41.2e-1674118147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Cotton_A_35841_BGI-A2_v1.0  74 RGQITPHEESIIIELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118
                                 7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6341672IPR017930Myb domain
SuperFamilySSF466897.49E-3118115IPR009057Homeodomain-like
SMARTSM007172.7E-172070IPR001005SANT/Myb domain
PfamPF002492.1E-182168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-242275IPR009057Homeodomain-like
CDDcd001671.12E-122368No hitNo description
PROSITE profilePS5129418.37473123IPR017930Myb domain
SMARTSM007179.1E-1573121IPR001005SANT/Myb domain
PfamPF002497.6E-1474118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2476122IPR009057Homeodomain-like
CDDcd001672.70E-1078119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSWAMMAGHL GWGFIEEGWR KGPWTAEEDK LLIEYVKLHG EGRWNSVARL AGLKRNGKSC  60
RLRWVNYLRP DLKRGQITPH EESIIIELHA RWGNRWSTIA RSLPGRTDNE IKNYWRTHFK  120
KKNKLPSDNN TSDLKSKARL LKRQQFQQQQ LLQQQQQQLQ LQQQQEQHEQ QLQLNQLDMK  180
RIMSLLDETE NKSSVLPYVP QLRQEMATAV SYPNTTVEQQ QAGLFYPMMD FDGNVSGSGS  240
DTSNEVDVLW DGLWNLDDIN GNFGATSKVS LHNLATPFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-272112227127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6149813e-67JX614981.1 Gossypium hirsutum clone NBRI_GE58733 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633244.10.0PREDICTED: transcription factor MYB24-like
TrEMBLA0A1U8MDI70.0A0A1U8MDI7_GOSHI; transcription factor MYB24-like
STRINGGorai.005G054900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.12e-84myb domain protein 79