PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_35746_BGI-A2_v1.0

Common Name

F383_27739

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 317aa MW: 35245.8 Da PI: 6.1879

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_35746_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.5	2.9e-13	155	213	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A rs qRK ++i+eLe+kv++L++e ++L +l +l+ +a l+s++ Cotton_A_35746_BGI-A2_v1.0 155 KRVKRILANRQSAARSKQRKMQYIAELEQKVQTLQTEATTLSAQLTMLQRDSAGLTSQN 213 8999*************************************************999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-19	151	215	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.128	153	216	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-13	155	212	No hit	No description
Pfam	PF00170	4.3E-11	155	213	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.01E-12	155	210	No hit	No description
CDD	cd14703	1.10E-22	156	207	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MNLENLETLN SSGTEDRDMD SKASGTKTYG GESSDNEVDS RVHKHPINIQ GMSSGVSSEK 60 REGVKRRAAG DIAPTVRHYR SVSMDSYMGS LQFDEDTPKI PPSGNHGNHH SPGSSGDANS 120 SKFNFELGSS EFNESELKKI MENEKLAEMA SVDPKRVKRI LANRQSAARS KQRKMQYIAE 180 LEQKVQTLQT EATTLSAQLT MLQRDSAGLT SQNNELKFRL QAMEQQAQLK DALNEALAAE 240 VQRLKLTAAE FSGEVHLSNC MAQQLSIDHQ MLQLQPQQQQ QLNIYQMQQQ HQPQQGHDNQ 300 SQTQQQNGDA SAANESK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	175	ARSKQRKMQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613569.1	0.0	PREDICTED: transcription factor RF2a-like, partial
Swissprot	O22873	3e-48	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0B0P5B4	0.0	A0A0B0P5B4_GOSAR; Transcription factor VIP1-like protein
STRING	Gorai.005G111000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4224	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	3e-92	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]