PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35739_BGI-A2_v1.0
Common NameF383_21934
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 756aa    MW: 82723.7 Da    PI: 5.6283
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35739_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.3e-2093148156
                                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Cotton_A_35739_BGI-A2_v1.0  93 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 148
                                 688999***********************************************999 PP

2START219.51.1e-682764961206
                                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 
                                 ela +a++elv++++ +ep+W++s      ++n++e++++f+++ +     ++ ea+++++vv+m++ +lve+l+d++ qW++
  Cotton_A_35739_BGI-A2_v1.0 276 ELAVAAMEELVRMVQMGEPLWMTSLdgttCMLNEEEYIRTFPSGIGpkptgFKCEASKETTVVIMNHINLVEILMDVN-QWST 357
                                 57899********************99999***********99999********************************.**** PP

                                 T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E CS
                       START  75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae 146
                                  +     ka+tl+v+s+g      galq+m+ae+q+lsplvp R++++vRy++q+ +g+w++vdvS+d  ++ p+    vR++
  Cotton_A_35739_BGI-A2_v1.0 358 VFSgiisKASTLDVLSTGvagnynGALQVMTAEFQVLSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDTIRPSPT----VRCR 436
                                 ************************************************************************996....**** PP

                                 ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                       START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                 ++pSg+li++++ng+skvtwvehv++++  +h+l+++lv+sg+a+ga++wv+tl+rqce+
  Cotton_A_35739_BGI-A2_v1.0 437 RRPSGCLIQEMPNGYSKVTWVEHVEVDDGGVHNLYKQLVSSGHAFGARRWVSTLDRQCER 496
                                 **********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2271148IPR009057Homeodomain-like
SuperFamilySSF466893.68E-1979150IPR009057Homeodomain-like
PROSITE profilePS5007116.68290150IPR001356Homeobox domain
SMARTSM003894.0E-1991154IPR001356Homeobox domain
PfamPF000461.2E-1793148IPR001356Homeobox domain
CDDcd000861.57E-1893151No hitNo description
PROSITE profilePS5084844.892267499IPR002913START domain
SuperFamilySSF559611.58E-35269498No hitNo description
CDDcd088758.88E-127271495No hitNo description
SMARTSM002346.2E-65276496IPR002913START domain
PfamPF018523.0E-58277496IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-5372462IPR023393START-like domain
SuperFamilySSF559616.05E-24516748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MPAGVMIPAR NMPSMITGNG SVSGYGTSSG LTLGQPNNMM EGQLHPLEMT QNASESEIAR  60
MRDEEFDSTN KSGSENHELG GSGDDQDPRP NKKKRYHRHT QHQIQEMEAF FKECPHPDDK  120
QRKELGRELG LEPLQVKFWF QNKRTQMKTQ HERHENTQLR TENEKLRADN MRYREALSTA  180
SCPNCGGPTA VGQMSFDEHH LRLENSRLRE EIDRISAIAA KYVGKPVVNF PLLSSPALPR  240
PFDFGSQPVT EEMYGVGDLL RSISAPSEAD KPMIIELAVA AMEELVRMVQ MGEPLWMTSL  300
DGTTCMLNEE EYIRTFPSGI GPKPTGFKCE ASKETTVVIM NHINLVEILM DVNQWSTVFS  360
GIISKASTLD VLSTGVAGNY NGALQVMTAE FQVLSPLVPT RESYYVRYCK QHAEGTWAVV  420
DVSLDTIRPS PTVRCRRRPS GCLIQEMPNG YSKVTWVEHV EVDDGGVHNL YKQLVSSGHA  480
FGARRWVSTL DRQCERLASL MASNIPTGDV GVITNQDGRK SMLKLAERMV ISFCGGVSAS  540
TAHTWTTLSG TGADDVRVMT RKSVDDPGRP PGIVLSAATS FWLPVSPKRV FDFLRDEHSR  600
SEWDILSNGG AVQEMAHIAN GRDPGNCVSL LRVNSANSSQ SNMLILQESC TDPTASFVIY  660
APVDIVAMNV VLNGGDPDYV ALLPSGFAIL PDGMTVTDVG MADSGGSSGS LLTVAFQILV  720
DSVPTAKLSL GSVATVNNLI ACTVERIKAS LSCDNA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638204.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0B0MS190.0A0A0B0MS19_GOSAR; Homeobox-leucine zipper protein HDG2
STRINGGorai.005G150100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2