PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_35739_BGI-A2_v1.0 | ||||||||
Common Name | F383_21934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 756aa MW: 82723.7 Da PI: 5.6283 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.3e-20 | 93 | 148 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k Cotton_A_35739_BGI-A2_v1.0 93 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 148 688999***********************************************999 PP | |||||||
2 | START | 219.5 | 1.1e-68 | 276 | 496 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 ela +a++elv++++ +ep+W++s ++n++e++++f+++ + ++ ea+++++vv+m++ +lve+l+d++ qW++ Cotton_A_35739_BGI-A2_v1.0 276 ELAVAAMEELVRMVQMGEPLWMTSLdgttCMLNEEEYIRTFPSGIGpkptgFKCEASKETTVVIMNHINLVEILMDVN-QWST 357 57899********************99999***********99999********************************.**** PP T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E CS START 75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae 146 + ka+tl+v+s+g galq+m+ae+q+lsplvp R++++vRy++q+ +g+w++vdvS+d ++ p+ vR++ Cotton_A_35739_BGI-A2_v1.0 358 VFSgiisKASTLDVLSTGvagnynGALQVMTAEFQVLSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDTIRPSPT----VRCR 436 ************************************************************************996....**** PP ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++pSg+li++++ng+skvtwvehv++++ +h+l+++lv+sg+a+ga++wv+tl+rqce+ Cotton_A_35739_BGI-A2_v1.0 437 RRPSGCLIQEMPNGYSKVTWVEHVEVDDGGVHNLYKQLVSSGHAFGARRWVSTLDRQCER 496 **********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 71 | 148 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.68E-19 | 79 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.682 | 90 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-19 | 91 | 154 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-17 | 93 | 148 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.57E-18 | 93 | 151 | No hit | No description |
PROSITE profile | PS50848 | 44.892 | 267 | 499 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.58E-35 | 269 | 498 | No hit | No description |
CDD | cd08875 | 8.88E-127 | 271 | 495 | No hit | No description |
SMART | SM00234 | 6.2E-65 | 276 | 496 | IPR002913 | START domain |
Pfam | PF01852 | 3.0E-58 | 277 | 496 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.1E-5 | 372 | 462 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 6.05E-24 | 516 | 748 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MPAGVMIPAR NMPSMITGNG SVSGYGTSSG LTLGQPNNMM EGQLHPLEMT QNASESEIAR 60 MRDEEFDSTN KSGSENHELG GSGDDQDPRP NKKKRYHRHT QHQIQEMEAF FKECPHPDDK 120 QRKELGRELG LEPLQVKFWF QNKRTQMKTQ HERHENTQLR TENEKLRADN MRYREALSTA 180 SCPNCGGPTA VGQMSFDEHH LRLENSRLRE EIDRISAIAA KYVGKPVVNF PLLSSPALPR 240 PFDFGSQPVT EEMYGVGDLL RSISAPSEAD KPMIIELAVA AMEELVRMVQ MGEPLWMTSL 300 DGTTCMLNEE EYIRTFPSGI GPKPTGFKCE ASKETTVVIM NHINLVEILM DVNQWSTVFS 360 GIISKASTLD VLSTGVAGNY NGALQVMTAE FQVLSPLVPT RESYYVRYCK QHAEGTWAVV 420 DVSLDTIRPS PTVRCRRRPS GCLIQEMPNG YSKVTWVEHV EVDDGGVHNL YKQLVSSGHA 480 FGARRWVSTL DRQCERLASL MASNIPTGDV GVITNQDGRK SMLKLAERMV ISFCGGVSAS 540 TAHTWTTLSG TGADDVRVMT RKSVDDPGRP PGIVLSAATS FWLPVSPKRV FDFLRDEHSR 600 SEWDILSNGG AVQEMAHIAN GRDPGNCVSL LRVNSANSSQ SNMLILQESC TDPTASFVIY 660 APVDIVAMNV VLNGGDPDYV ALLPSGFAIL PDGMTVTDVG MADSGGSSGS LLTVAFQILV 720 DSVPTAKLSL GSVATVNNLI ACTVERIKAS LSCDNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017638204.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A0B0MS19 | 0.0 | A0A0B0MS19_GOSAR; Homeobox-leucine zipper protein HDG2 | ||||
STRING | Gorai.005G150100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |