PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_35637_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 429aa MW: 48742.3 Da PI: 5.3302 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.5 | 9.9e-31 | 97 | 239 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lp+G++F+P+d el+ ++L++k+ + ++++ + ++ +i++++P++Lp ++++ ++++fF+++ ++y+tg+rk+ Cotton_A_35637_BGI-A2_v1.0 97 LPVGVKFDPSDAELL-DHLAAKCGVGDskehlfIDEFILtLGDCqGICYTHPENLP-GARKDGSSIHFFHRTINAYSTGQRKR 177 799************.899999877774455543333334667767**********.555678899***************** PP NAM 76 ra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 r+ ++ +W++tgk+k+v++ +g ++g kk++v+y +++ k+ek++Wvmh+y+l Cotton_A_35637_BGI-A2_v1.0 178 RKiqnqdstnEEHVRWHKTGKTKPVTE-NGVHKGWKKIMVLYksTKKGYKPEKSNWVMHQYHL 239 *86777775544899***********9.999***********4434666888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-35 | 82 | 258 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.337 | 97 | 258 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-13 | 98 | 239 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MNQRSHCQAW EASRRLKIIT KNAMKLEIRS CQVLKHSSDK EPNFVSWLVD SRAIAKKVKN 60 ASWSSSVQIT DCGANRECPN CHYRIDNSDV FPQWPGLPVG VKFDPSDAEL LDHLAAKCGV 120 GDSKEHLFID EFILTLGDCQ GICYTHPENL PGARKDGSSI HFFHRTINAY STGQRKRRKI 180 QNQDSTNEEH VRWHKTGKTK PVTENGVHKG WKKIMVLYKS TKKGYKPEKS NWVMHQYHLG 240 DTEDEHDGEY VVSKIFYQQQ KQTEKNDDSP MTEEPDNLMI HTSPRTPKTI TPDPPRPWKS 300 MMLDDIEENM HQEANFAVER SDVHTDAVQC EDNSDYPAWL AGESQAVENP DFNGFDEFLL 360 CNELLDSSSL PTTNDPKADC AAIETKGNND ASCGISELEN LEFDTPPDVT LADLQFGSQE 420 SILSWLDRL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847196 | 0.0 | KC847196.1 Gossypium hirsutum NAC domain protein NAC19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017609925.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
TrEMBL | A0A0D2RWI6 | 0.0 | A0A0D2RWI6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G034600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 1e-100 | NAC domain containing protein 85 |