PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35637_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 429aa    MW: 48742.3 Da    PI: 5.3302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35637_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.59.9e-31972391128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 
                                 lp+G++F+P+d el+ ++L++k+   +      ++++   + ++ +i++++P++Lp  ++++ ++++fF+++ ++y+tg+rk+
  Cotton_A_35637_BGI-A2_v1.0  97 LPVGVKFDPSDAELL-DHLAAKCGVGDskehlfIDEFILtLGDCqGICYTHPENLP-GARKDGSSIHFFHRTINAYSTGQRKR 177
                                 799************.899999877774455543333334667767**********.555678899***************** PP

                         NAM  76 ra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                 r+         ++ +W++tgk+k+v++ +g ++g kk++v+y  +++  k+ek++Wvmh+y+l
  Cotton_A_35637_BGI-A2_v1.0 178 RKiqnqdstnEEHVRWHKTGKTKPVTE-NGVHKGWKKIMVLYksTKKGYKPEKSNWVMHQYHL 239
                                 *86777775544899***********9.999***********4434666888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3582258IPR003441NAC domain
PROSITE profilePS5100529.33797258IPR003441NAC domain
PfamPF023652.0E-1398239IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNQRSHCQAW EASRRLKIIT KNAMKLEIRS CQVLKHSSDK EPNFVSWLVD SRAIAKKVKN  60
ASWSSSVQIT DCGANRECPN CHYRIDNSDV FPQWPGLPVG VKFDPSDAEL LDHLAAKCGV  120
GDSKEHLFID EFILTLGDCQ GICYTHPENL PGARKDGSSI HFFHRTINAY STGQRKRRKI  180
QNQDSTNEEH VRWHKTGKTK PVTENGVHKG WKKIMVLYKS TKKGYKPEKS NWVMHQYHLG  240
DTEDEHDGEY VVSKIFYQQQ KQTEKNDDSP MTEEPDNLMI HTSPRTPKTI TPDPPRPWKS  300
MMLDDIEENM HQEANFAVER SDVHTDAVQC EDNSDYPAWL AGESQAVENP DFNGFDEFLL  360
CNELLDSSSL PTTNDPKADC AAIETKGNND ASCGISELEN LEFDTPPDVT LADLQFGSQE  420
SILSWLDRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8471960.0KC847196.1 Gossypium hirsutum NAC domain protein NAC19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609925.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLA0A0D2RWI60.0A0A0D2RWI6_GOSRA; Uncharacterized protein
STRINGGorai.006G034600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.11e-100NAC domain containing protein 85