PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35591_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 370aa    MW: 41721.3 Da    PI: 6.6511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35591_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078426123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                +kC+ C ksF +   L  H+r+H
  Cotton_A_35591_BGI-A2_v1.0  4 HKCKLCFKSFANGRALGGHMRSH 26
                                79********************9 PP
2zf-C2H214.20.00013241263123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ykC+ C+k+F++   L  H  +H
  Cotton_A_35591_BGI-A2_v1.0 241 YKCETCNKVFKSYQALGGHRASH 263
                                 9************9999998887 PP
3zf-C2H211.40.001297319123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++Cp C ++Fs+   L  H r+H
  Cotton_A_35591_BGI-A2_v1.0 297 HECPVCFRVFSSGQALGGHKRSH 319
                                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.02E-5330No hitNo description
SMARTSM003550.051426IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-6427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.512431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.887241268IPR007087Zinc finger, C2H2
SuperFamilySSF576675.06E-9241263No hitNo description
SMARTSM003550.01241263IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-11241265IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
SuperFamilySSF576675.06E-9292319No hitNo description
PROSITE profilePS501579.224297319IPR007087Zinc finger, C2H2
SMARTSM003550.19297319IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-11297319IPR007087Zinc finger, C2H2
PROSITE patternPS000280299319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEKHKCKLCF KSFANGRALG GHMRSHMLNL PIPPKLAEQE RLGLPRPTNQ LSQESESESA  60
SASYSSSSSE EEEEGEEKGQ FYGLRENPKR SVRLVDPEFI DAGSVVLQDR ESETESSKNP  120
TRRRSKQTRR ILENHQQQRQ EQQEERKKLK VNNSSSNNNN NQVSKTEPWA EPEPVSSISD  180
ATTEEDVAFC LMMLSRDQWK SKVLHLDDEE GTEIEKSTEQ SYELQEYFKL SKVNRATRGK  240
YKCETCNKVF KSYQALGGHR ASHKKMKAYS PPATHNTELE PENVGTGPSS MTDKKIHECP  300
VCFRVFSSGQ ALGGHKRSHV VATTETPVRS SKKLGDSFID LNLPAPMDDD DASQIELSAV  360
SDAEFVNHIK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9642851e-125JX964285.1 Gossypium hirsutum clone NBRI_TRANS-554 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640280.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2Q0830.0A0A0D2Q083_GOSRA; Uncharacterized protein
STRINGGorai.001G175400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-66C2H2-like zinc finger protein