PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_35470_BGI-A2_v1.0 | ||||||||
Common Name | F383_17472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 28101.7 Da PI: 8.1024 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.6e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+++v ++G +W++++ g+ R +k+c++rw +yl Cotton_A_35470_BGI-A2_v1.0 15 KGLWSPEEDLKLKNYVLKHGHLCWSSVPINAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++Ed+ ++ ++++lG++ W++Ia+ ++ gRt++++k++w++yl Cotton_A_35470_BGI-A2_v1.0 68 RGMFTPQEDDVILSLHHLLGNK-WSRIAQSLP-GRTDNEIKNYWHSYL 113 789*******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.518 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.93E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.95E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.513 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.30E-11 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGCKPSDKPK AKHRKGLWSP EEDLKLKNYV LKHGHLCWSS VPINAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FTPQEDDVIL SLHHLLGNKW SRIAQSLPGR TDNEIKNYWH SYLKKRIAKV 120 ENLEAQHTSS TSESSVLPQN LTDQSASFVT DQAVPMHFDL PQRSPLPKLL FAEWLSLDKE 180 GGSKPAAYSD GYNQASASSF EDPFMNGFVF NEGGFGTDLQ DLLNDASVNQ LFKFEFQISG 240 NDFIGSGWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-24 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625709.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
TrEMBL | A0A0B0NKF4 | 0.0 | A0A0B0NKF4_GOSAR; Transcription factor LAF1-like protein | ||||
STRING | EOY23173 | 1e-128 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 6e-62 | myb domain protein 19 |