PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35449_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 357aa    MW: 40067.1 Da    PI: 9.1217
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35449_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.5e-1464112155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Cotton_A_35449_BGI-A2_v1.0  64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 112
                                 89****9888.8*********3.....5**********99*************98 PP
2B398.54e-31193293196
                                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                 f+k+ tpsdv+k++rlv+pk++ae++     g+ + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+ D
  Cotton_A_35449_BGI-A2_v1.0 193 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqsGSASSKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKASD 275
                                 89****************************97788899********************************************* PP

                                 EEEEEE-SSSEE..EEEE CS
                          B3  79 fvvFkldgrsefelvvkv 96 
                                 +v F+++  +e++l++ +
  Cotton_A_35449_BGI-A2_v1.0 276 IVSFQRSTGTEKQLYIDW 293
                                 *****8765666677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.44E-2664122No hitNo description
PfamPF008478.5E-964112IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1764121IPR016177DNA-binding domain
PROSITE profilePS5103220.12665120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2065121IPR001471AP2/ERF domain
SMARTSM003803.3E-2965126IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.7E-41188296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-31191294IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-26192287No hitNo description
PROSITE profilePS5086313.733193295IPR003340B3 DNA binding domain
SMARTSM010191.1E-23193297IPR003340B3 DNA binding domain
PfamPF023621.8E-28193294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDGSSIDEST TSDSISVSIA PSNISPLPQL TKSPDSLYRV GSGTSVIVDS ESGVEAESRK  60
LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA KAYDIAAQRF RGRDAVTNFK  120
HLHEMEDDDI QIAFLNSHSK AEIVDMLRKH TYNDELEQSR RSYGFDGNGK RIVRKEDGFG  180
TLGFELKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKYFP LQSGSASSKG VLLNFEDVTG  240
KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LKASDIVSFQ RSTGTEKQLY IDWKARTGLG  300
SGLENPVQMV RLFGVNIFKM PGSENVGLAG GCNGKRTREM ELLELECSKK QRVIDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5919029811119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8377010.0JQ837701.1 Gossypium hirsutum cultivar ZM3 RAV mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638973.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM91e-156RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2P5RDX10.0A0A2P5RDX1_GOSBA; Uncharacterized protein
STRINGGorai.008G185900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-153related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]