PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35443_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 836aa    MW: 92802.1 Da    PI: 6.4235
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35443_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23128229199
                                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                 f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++ +r++++r++lt+GW+ Fv+a++L +g
  Cotton_A_35443_BGI-A2_v1.0 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPA-QELVARDLHENEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAG 209
                                 99***********************9*****9777766.49****************************************** PP

                                 -EEEEEE-SSSEE..EEEEE-S CS
                          B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                 D+v+F   ++++ +l+++++r+
  Cotton_A_35443_BGI-A2_v1.0 210 DSVLFI--WNEKNQLLLGIRRA 229
                                 ******..8899999****997 PP
2Auxin_resp120.11.7e-39254337183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+
  Cotton_A_35443_BGI-A2_v1.0 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYyTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPGRWPNSHWRSV 336
                                 79*********************************989*******************************************98 PP

                  Auxin_resp  83 k 83 
                                 k
  Cotton_A_35443_BGI-A2_v1.0 337 K 337
                                 5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.68E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-41121243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-21127228No hitNo description
PROSITE profilePS5086312.506128230IPR003340B3 DNA binding domain
SMARTSM010191.9E-24128230IPR003340B3 DNA binding domain
PfamPF023621.4E-21128229IPR003340B3 DNA binding domain
PfamPF065075.0E-34254337IPR010525Auxin response factor
SuperFamilySSF542778.5E-5764836No hitNo description
PROSITE profilePS5174521.699768836IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MRLSSSGFNQ QTEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKNV FLLPAELGTP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS LQPPAQELVA RDLHENEWKF  180
RHVFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYY TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPGRWPN SHWRSVKVGW DESTAGEKQP RVSLWEIEPL  360
TTFPMYSSPF PLRLKRPWPS ALPSFHAFKD GDTNINSQMM WLQGGIGDQG LQSLNFQGFG  420
VAPWMQPRLD TSSIQSVQPD LYQAMAAAAF QEMRTVDSSK IGSQSLLQFQ QPRSMTDGSP  480
AIIQRQMLQQ SQTQNAFLQG FQENQTTSQV QLLQQLQRSN SYNNHRQQQQ QQQQQQQSQQ  540
MQQTPQFSDQ QQISNLIPAF PKASGSQAQS SSLPTAASEC QQQTFSDPLG NSLALSNASS  600
MQSILGSLSH AGASHLLNLK GSNPIISSSL LSKPVAIEPQ LSSETANYVL PQVEHLGMVQ  660
SNVLSNLLPP FPGREYSAYQ SSTDPQNNFL FGVSIDSSSL MLQQGMTNLK NTGNENDSLS  720
MPYAASNFTS ASGTDFPLNS DMTTSSCVDE SGYLQSSEYV DQVNPPTGTF VKVHKLGSFG  780
RSLDISKFSS YNELRCELAR MFGLEGQLED PQRSGWQLVF VDRENDILLL GDDPWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661635847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016734940.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1U8N7J80.0A0A1U8N7J8_GOSHI; Auxin response factor
STRINGGorai.008G097200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]