PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35376_BGI-A2_v1.0
Common NameF383_20175
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 352aa    MW: 39984.4 Da    PI: 5.1144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35376_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161663148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+W+++Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Cotton_A_35376_BGI-A2_v1.0 16 RGPWSPQEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                                89******************************99************97 PP
2Myb_DNA-binding50.35.4e-1669114148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++++eE+e ++++++ lG++ W++Ia+++  gRt++++k+ w+++l
  Cotton_A_35376_BGI-A2_v1.0  69 RGNFSKEEEETIIRLHETLGNK-WSKIASHLA-GRTDNEIKNVWNTHL 114
                                 89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23766IPR009057Homeodomain-like
PROSITE profilePS5129415.3461163IPR017930Myb domain
SuperFamilySSF466898.24E-2914110IPR009057Homeodomain-like
SMARTSM007174.4E-131565IPR001005SANT/Myb domain
PfamPF002492.2E-151663IPR001005SANT/Myb domain
CDDcd001672.88E-91863No hitNo description
PROSITE profilePS5129424.88864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2667118IPR009057Homeodomain-like
SMARTSM007173.4E-1568116IPR001005SANT/Myb domain
PfamPF002498.3E-1569114IPR001005SANT/Myb domain
CDDcd001672.39E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGKGRAPCCD KDKVKRGPWS PQEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSKEEEETI IRLHETLGNK WSKIASHLAG RTDNEIKNVW NTHLKKRLAP  120
KNGKIPQNDQ SKETCMVSSS CSSITFVSSP CGKRNLEVEL EQQWHEGSPS KKPREGFPVS  180
DKAEAFKTEV PSHNSGPFEE PKEFPSSSIS SSNSNITNSS QVNVPNPENH GDSLLNFIGV  240
YDWENNTSEE VNKPEILNNA FDIPLESDSD FWDMLDSLGS FQPDEIQSNE VEGNQSPDFG  300
EEYSKENENN KWLQYLEIEL GLEVTKNENH NNLSNTAAEP LVPEMYDMLL KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-24161184105MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-241611858159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-241611858159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-24161184105C-Myb DNA-Binding Domain
1msf_C2e-24161184105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591394e-58AJ459139.1 Gossypium hirsutum partial myb113 gene, clone pGhMYB113.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640897.10.0PREDICTED: myb-related protein 306-like
TrEMBLA0A0B0NJ990.0A0A0B0NJ99_GOSAR; Myb-related Zm1
STRINGGorai.002G106300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.14e-76myb domain protein 72