PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35235_BGI-A2_v1.0
Common NameF383_19978
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 635aa    MW: 70748.3 Da    PI: 4.8826
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35235_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.4e-5291351127
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lp GfrF+Ptdeel+++yL+ k++g++ e+  vi+e+d++k+ePwdLp  + +k+++ ew+fF++ d+ky++++r+nrat++g
  Cotton_A_35235_BGI-A2_v1.0   9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-GVIPEIDVCKWEPWDLPglSVIKSDDPEWFFFCPLDRKYPNSHRSNRATDKG 90 
                                 699************************999.99***************6447888888************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                 yWkatgkd++++s k++l+g+kktLvfykgrapkg++t W+mheyr
  Cotton_A_35235_BGI-A2_v1.0  91 YWKATGKDRTIKS-KKSLIGMKKTLVFYKGRAPKGQRTYWIMHEYR 135
                                 *************.899****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-604159IPR003441NAC domain
PROSITE profilePS5100555.3549159IPR003441NAC domain
PfamPF023651.2E-2610135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MAVLTMETLP LGFRFRPTDE ELINHYLRLK INGRHSEVGV IPEIDVCKWE PWDLPGLSVI  60
KSDDPEWFFF CPLDRKYPNS HRSNRATDKG YWKATGKDRT IKSKKSLIGM KKTLVFYKGR  120
APKGQRTYWI MHEYRPTTKD LDGTAPGQSA FVLCRLFHKP EEKNDIVKYD EVEQTVCSAA  180
MTKSAPDDDT SSDLLQDTIS SETQAQNPDT SMPNGQITGD SCCNSHMTSD AEDHAAEETL  240
KYPLLGSNSD LYEPNCDEID YKVFSPMNSQ FFEDLPPYMD SPYASDFGHD QNGFHFQDGT  300
SKQDISFPLL DEALNNHDNF SEESNSWKNL VAGTEMPLSG NAFISKAMPP ETSYVKENGI  360
YTEMLPVQYE SDIGGPGWSG GFIDDKNSVQ MLTSLESSLT QTAPYDPVFI GGHIGGPENY  420
CVGQATSSTN SAIGDFNNLQ QLTGLRNHVN NGGVTGMRTR ACQPLQQPLE DFETLGTGFN  480
FRTRGPQGKP SLDHILNQGN APRRLRLLMK ISNGPMKVSA GCFDDGKLTS AGLGEEEEVQ  540
SALTEVIEAE ATGQTSSSYE SKKENQLFKF TSSEDIGKEP CTKLRQRVKE DSKPCSSQMC  600
SKTEPMHKRP SSLSVLLLVV FIITILFILV MGIWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-44916215171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017620325.10.0PREDICTED: protein NTM1-like 9 isoform X1
TrEMBLA0A0B0MER00.0A0A0B0MER0_GOSAR; NAC domain-containing 78-like protein
STRINGGorai.003G073300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-128NAC 014