PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_35228_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 39631 Da PI: 5.9326 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.1e-21 | 152 | 202 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Cotton_A_35228_BGI-A2_v1.0 152 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 202 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.79E-34 | 151 | 211 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-23 | 152 | 210 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.235 | 152 | 209 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-38 | 152 | 215 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-32 | 152 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 153 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 153 | 202 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 175 | 191 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MAAAIDMYNS NSNSSVFSDP FSAELMKALE PFMKSASSTS PLSSSSSYSQ SNLYPEFCSP 60 WRTHLCSEQG FCNYQNLMGF EQTGSIGLNQ LTPSQILQIQ AQIYQQQQQQ QQQEVASKST 120 TASLKNQRFN FLSPKAVPMK HVSSTPPKPT KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG 180 TFDTAEEAAL AYDKAAYKLR GEFARLNFPH LKHQGAHISG EFGDYKPLHY AVDAKLQAIC 240 QSLQKQENSG KACSVPDSNP KVEFDYPVKR EEFDQSPRFA SPKVEMNSLS SSSSSPSSPD 300 LSDESLAGSS SPESDITFFD FSDSKWDDNE IFGLEKYPSV EIDWEAIREL SES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 151 | 209 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ848094 | 0.0 | GQ848094.1 Gossypium hirsutum DREB1C (DREB1C) mRNA, complete cds. | |||
GenBank | KP780203 | 0.0 | KP780203.1 Gossypium hirsutum C-repeat binding factor 20 (CBF20) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017627594.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF060-like | ||||
Refseq | XP_017627643.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF060-like | ||||
TrEMBL | A0A1U8ILU9 | 0.0 | A0A1U8ILU9_GOSHI; ethylene-responsive transcription factor ERF060-like | ||||
STRING | Gorai.007G240700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2680 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 3e-70 | ERF family protein |