PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35227_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 353aa    MW: 39631 Da    PI: 5.9326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35227_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.1e-21152202256
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Cotton_A_35227_BGI-A2_v1.0 152 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 202
                                 59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.79E-34151211No hitNo description
SuperFamilySSF541711.5E-23152210IPR016177DNA-binding domain
PROSITE profilePS5103223.235152209IPR001471AP2/ERF domain
SMARTSM003802.3E-38152215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-32152210IPR001471AP2/ERF domain
PRINTSPR003673.4E-11153164IPR001471AP2/ERF domain
PfamPF008471.8E-14153202IPR001471AP2/ERF domain
PRINTSPR003673.4E-11175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAAAIDMYNS NSNSSVFSDP FSAELMKALE PFMKSASSTS PLSSSSSYSQ SNLYPEFCSP  60
WRTHLCSEQG FCNYQNLMGF EQTGSIGLNQ LTPSQILQIQ AQIYQQQQQQ QQQEVASKST  120
TASLKNQRFN FLSPKAVPMK HVSSTPPKPT KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG  180
TFDTAEEAAL AYDKAAYKLR GEFARLNFPH LKHQGAHISG EFGDYKPLHY AVDAKLQAIC  240
QSLQKQENSG KACSVPDSNP KVEFDYPVKR EEFDQSPRFA SPKVEMNSLS SSSSSPSSPD  300
LSDESLAGSS SPESDITFFD FSDSKWDDNE IFGLEKYPSV EIDWEAIREL SES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21151209160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8480940.0GQ848094.1 Gossypium hirsutum DREB1C (DREB1C) mRNA, complete cds.
GenBankKP7802030.0KP780203.1 Gossypium hirsutum C-repeat binding factor 20 (CBF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627594.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
RefseqXP_017627643.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
TrEMBLA0A1U8ILU90.0A0A1U8ILU9_GOSHI; ethylene-responsive transcription factor ERF060-like
STRINGGorai.007G240700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-70ERF family protein