PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_35198_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 36135.6 Da PI: 6.5055 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.6 | 4.1e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeel+ +yL++k+++++++l ++i++v+iyk++Pw+Lp k+ +e+ew+fFs+rd+ky++g+r+nrat gyW Cotton_A_35198_BGI-A2_v1.0 11 LPPGFRFHPTDEELIIYYLTQKLSSSSNPLINIIADVNIYKFDPWELPGKALFGENEWFFFSPRDRKYPNGTRPNRATGCGYW 93 79****************************999***************8777899**************************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk+++++ +++ g+kktLvfykgr pk+++tdWvm eyrl Cotton_A_35198_BGI-A2_v1.0 94 KATGTDKPIITSvGSQCLGMKKTLVFYKGRPPKASRTDWVMTEYRL 139 *********99978888***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-61 | 5 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.882 | 11 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-27 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MYGMSSGSDI LPPGFRFHPT DEELIIYYLT QKLSSSSNPL INIIADVNIY KFDPWELPGK 60 ALFGENEWFF FSPRDRKYPN GTRPNRATGC GYWKATGTDK PIITSVGSQC LGMKKTLVFY 120 KGRPPKASRT DWVMTEYRLL YDHFLPQKPK GSMRLDDWVL CRVHHKSKVP QQITSGRNYD 180 RSSSCSPPFQ RGCLQGQEMI LNNYTIQQSN EYHQFPSHNY HMTIPLENEQ LDNQMECDGT 240 TTVDFNIGDM LEYIDHRVFH EGDITFGQEL PLVSEKRLNA SVSMHDDGNA YVPQICSQAP 300 SSSSSSSYRE VFLEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-64 | 11 | 172 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-64 | 11 | 172 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-64 | 11 | 172 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-64 | 11 | 172 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-64 | 11 | 172 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-64 | 11 | 172 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847242 | 0.0 | KC847242.1 Gossypium hirsutum NAC domain protein NAC65 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610438.1 | 0.0 | PREDICTED: NAC transcription factor 56-like | ||||
Swissprot | K4BNG7 | 9e-71 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1U8HW31 | 0.0 | A0A1U8HW31_GOSHI; NAC transcription factor 56-like | ||||
STRING | Gorai.006G088400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25010 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 9e-70 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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