PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35198_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 315aa    MW: 36135.6 Da    PI: 6.5055
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35198_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.64.1e-52111391128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrFhPtdeel+ +yL++k+++++++l ++i++v+iyk++Pw+Lp k+  +e+ew+fFs+rd+ky++g+r+nrat  gyW
  Cotton_A_35198_BGI-A2_v1.0  11 LPPGFRFHPTDEELIIYYLTQKLSSSSNPLINIIADVNIYKFDPWELPGKALFGENEWFFFSPRDRKYPNGTRPNRATGCGYW 93 
                                 79****************************999***************8777899**************************** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg+dk+++++ +++  g+kktLvfykgr pk+++tdWvm eyrl
  Cotton_A_35198_BGI-A2_v1.0  94 KATGTDKPIITSvGSQCLGMKKTLVFYKGRPPKASRTDWVMTEYRL 139
                                 *********99978888***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-615166IPR003441NAC domain
PROSITE profilePS5100558.88211166IPR003441NAC domain
PfamPF023657.6E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MYGMSSGSDI LPPGFRFHPT DEELIIYYLT QKLSSSSNPL INIIADVNIY KFDPWELPGK  60
ALFGENEWFF FSPRDRKYPN GTRPNRATGC GYWKATGTDK PIITSVGSQC LGMKKTLVFY  120
KGRPPKASRT DWVMTEYRLL YDHFLPQKPK GSMRLDDWVL CRVHHKSKVP QQITSGRNYD  180
RSSSCSPPFQ RGCLQGQEMI LNNYTIQQSN EYHQFPSHNY HMTIPLENEQ LDNQMECDGT  240
TTVDFNIGDM LEYIDHRVFH EGDITFGQEL PLVSEKRLNA SVSMHDDGNA YVPQICSQAP  300
SSSSSSSYRE VFLEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-641117217171NO APICAL MERISTEM PROTEIN
1ut4_B2e-641117217171NO APICAL MERISTEM PROTEIN
1ut7_A2e-641117217171NO APICAL MERISTEM PROTEIN
1ut7_B2e-641117217171NO APICAL MERISTEM PROTEIN
4dul_A2e-641117217171NAC domain-containing protein 19
4dul_B2e-641117217171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472420.0KC847242.1 Gossypium hirsutum NAC domain protein NAC65 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610438.10.0PREDICTED: NAC transcription factor 56-like
SwissprotK4BNG79e-71NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A1U8HW310.0A0A1U8HW31_GOSHI; NAC transcription factor 56-like
STRINGGorai.006G088400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2501034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.19e-70NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]