PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_35053_BGI-A2_v1.0 | ||||||||
Common Name | F383_04843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 37021.6 Da PI: 5.2813 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.3 | 1.2e-56 | 17 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdee++++yL +kv ++++++ +i e+d++k+ePwdLp k+k +ekewyfF++rd+ky+tg r+nrat++gyW Cotton_A_35053_BGI-A2_v1.0 17 LPPGFRFHPTDEEIITHYLLEKVMNSNFSA-AAIGEADLNKSEPWDLPDKAKMGEKEWYFFCQRDRKYPTGMRTNRATQAGYW 98 79*************************999.78***************99999****************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 katgkdke+++ kg lvg+kktLvfykgrap+gekt+Wvmheyrle Cotton_A_35053_BGI-A2_v1.0 99 KATGKDKEIFKGKGCLVGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 144 ***********9********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-65 | 11 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.413 | 17 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-30 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MEDAIVVNQR QQELMELPPG FRFHPTDEEI ITHYLLEKVM NSNFSAAAIG EADLNKSEPW 60 DLPDKAKMGE KEWYFFCQRD RKYPTGMRTN RATQAGYWKA TGKDKEIFKG KGCLVGMKKT 120 LVFYKGRAPR GEKTNWVMHE YRLEGKFSYY NLPKAAKDEW VVCRVFHKNT AGINKSPIAM 180 ASLGDEFMDY ASLPPLMDPT FDCESEFKAI NKTPVSSSIF NPQIPTQDPV FFHPETSDSG 240 TGSFRTEDEA SIRALAGNYS GDHIGQRQCN KVEQFSSNQS MVSLSQDTGH STEINNNEIS 300 SVISKSFGLG SIDPYDDIED LACLWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 15 | 172 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 15 | 172 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 15 | 172 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 15 | 172 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-54 | 15 | 172 | 18 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-54 | 15 | 172 | 18 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-54 | 15 | 172 | 18 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-54 | 15 | 172 | 18 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-54 | 15 | 172 | 18 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-54 | 15 | 172 | 18 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-54 | 15 | 172 | 18 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-54 | 15 | 172 | 18 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-54 | 15 | 172 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 15 | 172 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU706340 | 0.0 | EU706340.1 Gossypium hirsutum NAC domain protein NAC6 (NAC6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618364.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9FK44 | 1e-120 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A0B0NKZ0 | 0.0 | A0A0B0NKZ0_GOSAR; NAC domain-containing protein | ||||
STRING | Gorai.013G118000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-123 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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