PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_34913_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 25688.7 Da PI: 5.4473 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.2 | 2.2e-16 | 162 | 214 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++ keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa Cotton_A_34913_BGI-A2_v1.0 162 RKKLRLCKEQSAFLEESFKEHNTLNPKKKLALAKQLNLRSRQVEVWFQNRRAS 214 56667789*******************************************95 PP | |||||||
2 | HD-ZIP_I/II | 79.3 | 6.4e-26 | 162 | 214 | 1 | 53 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rl keq+++LEesF+e+++L+p++K +la++L+l+ rqv+vWFqnrRA Cotton_A_34913_BGI-A2_v1.0 162 RKKLRLCKEQSAFLEESFKEHNTLNPKKKLALAKQLNLRSRQVEVWFQNRRAS 214 69*************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 3.1E-8 | 69 | 129 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 9.6E-16 | 152 | 212 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-15 | 155 | 213 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.208 | 158 | 218 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-11 | 160 | 222 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.1E-14 | 162 | 214 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.50E-13 | 162 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MELALSLGDP TKPFSLLGNT PKLSRSKDLG FCMGLGDGFK SQHKIDAFEA QSRGGSDVKR 60 VPSDPPLHLH LLPSSQTQLR IPCLTHEYGD GRGLDVNQLP PAAAAEEDDD EESEEGAAIS 120 SPNSTVSSFR MNFGIRNGKN KGKRDLEVER VSDDDDENGS TRKKLRLCKE QSAFLEESFK 180 EHNTLNPKKK LALAKQLNLR SRQVEVWFQN RRASDDVTID VEVDVIVDRE K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 166 | TRKKLRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX590975 | 9e-52 | JX590975.1 Gossypium hirsutum clone NBRI_GE25995 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017640285.1 | 1e-155 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 6e-45 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A1U8NHA6 | 1e-152 | A0A1U8NHA6_GOSHI; homeobox-leucine zipper protein HAT14-like isoform X2 | ||||
TrEMBL | A0A1U8NHM0 | 1e-152 | A0A1U8NHM0_GOSHI; homeobox-leucine zipper protein HOX11-like isoform X1 | ||||
STRING | Gorai.002G155800.1 | 1e-125 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4928 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 6e-31 | homeobox from Arabidopsis thaliana |