PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_34645_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 907aa MW: 102260 Da PI: 7.1411 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 135.4 | 1.9e-42 | 29 | 139 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlyc 83 ++e k+rwl+++ei+aiL n++ + + ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++ Cotton_A_34645_BGI-A2_v1.0 29 MEEaKSRWLRPNEIHAILSNYKYFPILVKPVNLPQSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHV 111 55669****************************************************************************** PP CG-1 84 yYahseenptfqrrcywlLeeelekivlvhylevk 118 yYah+ +nptf rr+ e+ivlvhy+e+k Cotton_A_34645_BGI-A2_v1.0 112 YYAHGLDNPTFVRRTL-------ENIVLVHYRETK 139 *************976.......68*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 61.913 | 25 | 144 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.2E-64 | 28 | 139 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.9E-37 | 31 | 137 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 2.94E-12 | 354 | 439 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.02E-18 | 526 | 650 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.1E-7 | 539 | 618 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.1E-17 | 541 | 651 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.41E-15 | 544 | 648 | No hit | No description |
PROSITE profile | PS50297 | 16.069 | 556 | 660 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1.7E-6 | 589 | 618 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.155 | 589 | 621 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2700 | 628 | 659 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 210 | 733 | 755 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.815 | 737 | 763 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 6.1E-4 | 775 | 797 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.402 | 776 | 800 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 5.1E-4 | 777 | 797 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 9 | 855 | 877 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.077 | 857 | 877 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.206 | 857 | 884 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 907 aa Download sequence Send to blast |
MDGSGSGQLA GTEIHGFHTL EDLDVRTMME EAKSRWLRPN EIHAILSNYK YFPILVKPVN 60 LPQSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP 120 TFVRRTLENI VLVHYRETKE GSPATPVNSN SCLTTDQSTP LLVTEDFDSG AANAYYEDLS 180 DSIKANHEMT LHEINTLEWD ELLVTNDSND SAVSSGDMNA CFDQWNQKTV NGLSNDGGPI 240 SAYNSSPDIS LLDNLVDPVA QSNNAYLNTR GGVCYQTPGT EVNSTMQRED SSAIGMGKPL 300 DLLINNGLES QDSFGKWINC TVTESPCSMG DPVLESSSSS GQDSFTSPEE IFSITEVSPA 360 WAYSTEKTKI LVTGVFHQAY QHLAKSNLFC VCGDVCYPAE AIQVGVYRCL LSQHAPGLVK 420 LYMSLDGHKP ISQVLNFEYI APLLHDPVVP LEDKSRWEEF RLQMRLAYLL FSTSKSLNIL 480 SGKVSPNSLK EAKKFAQKTS NISNSWTYLI QSIEENRASF TQAKDSLFEI ALKNRLKDWL 540 LERIIYGSKT TEYDAQGQGV IHLCAILGYT WAIYLFSWSG LSLDFRDKHG WTALHWAAYY 600 GREKMVAVLL SAGAKPNLVT DPTTQNPSGC TAADLASLNG YDGLAAYLSE EALVAQFNDM 660 ALAGNASGSL QTSRIEATNL VNLNEDELYL RETLAAYRTA ADAAARINTA FRAHSFKVRA 720 KAVESYNAED EARSIIAAMK IQHAFRNYEA KRKMAAAARI QYRFRTWKMH KDFLNMRRQA 780 IKIQAAFRGF QARRQYRKIV WSVGVLEKAI LRWRLRRKGF RGLQITTDEA VEEQRQETYI 840 EEAYYISSRK QAEERVEKAV IRVQSMFRSK KAQQEYRRMK LAHDLATLEY ESLIGPLSDM 900 MPKDHRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX588474 | 1e-130 | JX588474.1 Gossypium hirsutum clone NBRI_GE22909 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017649374.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A1U8IGT6 | 0.0 | A0A1U8IGT6_GOSHI; calmodulin-binding transcription activator 5-like | ||||
STRING | Gorai.011G198600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4021 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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