PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34627_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 639aa    MW: 68731.5 Da    PI: 7.571
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34627_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.82.4e-14124163242
                         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                                 ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  Cotton_A_34627_BGI-A2_v1.0 124 KQKQCNCKHSRCLKLYCECFASGVYCDG-CNCVNCYNNVEN 163
                                 89**************************.********9875 PP
2TCR50.83.4e-16208247140
                         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                 k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Cotton_A_34627_BGI-A2_v1.0 208 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 247
                                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.2E-16123163IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.081124248IPR005172CRC domain
PfamPF036384.0E-11125160IPR005172CRC domain
SMARTSM011148.4E-20208249IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12211246IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MGEGEGGEFP PKKVQSDTAG LPAKKLARQL DFTAGFGGGS SGGVVLPEHP QSTQEMAVAS  60
SSAVAAAVTQ QQQQQQIKPQ MVATSPIAAA QPPPLTTASS RVIKPESPKV KPRPTELKDG  120
TPKKQKQCNC KHSRCLKLYC ECFASGVYCD GCNCVNCYNN VENEAARRDA IEATLERNPN  180
AFRPKIASSP HGARDSREDA GEVLVLGKHN KGCHCKKSGC LKKYCECFQA NILCSENCKC  240
MDCKNFEGSE ERQALFHGDH ANNMAYIQQA ANAAITGAVG SSGFASIPVS KKRKGQELFF  300
GSTAKDPSVL RLGHFPQATH IRTSAPSPSM PVSCAATTAA VGMSKFTYRS LLADIIQKQD  360
LKELCSVLVV LSGEAAKTLA DQGSLTEKQA EDQTETSFVS STQDRLQSQK DFDAEKTVAD  420
DCSSANQADK VVPEDSSSDG ADTPKERPMS PGTLALMCDE QDTMFMKAPS NGLTDHGCST  480
SSQLPYGQGM TEIYAEQERI VLTKFRDCLN RLITFGEIKG KFLFPFTEYS HLIIFCTSKG  540
KKVSNDETIL DFIKTQCSSL ARIEIGSQRS LSNGTEVVRT ESGNQQGSFT NGVPKNVSPP  600
TIKTSQTAAV VITTANNDLQ RPPSLPENGD AKLKNEKQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-321162572132Protein lin-54 homolog
5fd3_B2e-321162572132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643336.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2P5X8Y10.0A0A2P5X8Y1_GOSBA; Uncharacterized protein
STRINGGorai.010G073200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein