PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34560_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 266aa    MW: 30096.9 Da    PI: 4.6317
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34560_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM706.2e-22111332128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksg 81 
                                 p+GfrF Pt ee++++yL++ ++g++++   v++e+diy +  ePw++    ++++ e  +  +k +k  ++++r +r++ +g
  Cotton_A_34560_BGI-A2_v1.0  11 PVGFRFLPTKEEIICDYLQPFIKGDPIPS-GVMEELDIYGAnrEPWNIF---DQDSAESlWVITKLKK--KSKSRIERTAGDG 87 
                                 89**************************9.99******976559****5...2333344134444433..3578********* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  W ++  ++   s +ge++g  k + + +++++k ++ +W+mhe++l
  Cotton_A_34560_BGI-A2_v1.0  88 CWLQQYIKEVKNSDGGEVIGYDKYFKYSRKKSQK-SNGQWIMHEFSL 133
                                 ***998866555669999*********9766666.89********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-234150IPR003441NAC domain
PROSITE profilePS5100525.710152IPR003441NAC domain
PfamPF023653.4E-1411133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSTVRPKLEI PVGFRFLPTK EEIICDYLQP FIKGDPIPSG VMEELDIYGA NREPWNIFDQ  60
DSAESLWVIT KLKKKSKSRI ERTAGDGCWL QQYIKEVKNS DGGEVIGYDK YFKYSRKKSQ  120
KSNGQWIMHE FSLKDQEALG LSDFVICEIK DAAVVSPDYE ECEGEINKNK KRKLMEVPST  180
STNDFAFVPM GNQAFEYMAP EAGGLSPLPP FTACLNQQPN PWTSAGVGGN LGVPYYNSHH  240
LEEAREDVNA NLYLTLQELD NFLNSD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6002762e-37JX600276.1 Gossypium hirsutum clone NBRI_GE38043 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648002.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A2P5Y0P60.0A0A2P5Y0P6_GOSBA; Uncharacterized protein
STRINGGorai.011G257000.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16345312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-16NAC domain containing protein 28