PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34546_BGI-A2_v1.0
Common NameF383_11151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 271aa    MW: 30466.5 Da    PI: 8.3253
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34546_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83.1e-16155236185
                                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                 f  v++p +v ++  + +p   +++h +k+++  +++l   + r+W+ +++y k+++   l++GWk Fv++n+L e D++vF+
  Cotton_A_34546_BGI-A2_v1.0 155 FMVVMKPTHVWRRFYMAIPVAWTAKHHLKENT--DIIL-RINKRTWRTRYNYHKNRDCGGLSGGWKCFVNDNNLIEHDVCVFE 234
                                 778999********************999655..5664.4688*******9977777778**********************9 PP

                                 E- CS
                          B3  84 ld 85 
                                  +
  Cotton_A_34546_BGI-A2_v1.0 235 PS 236
                                 54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.3E-12155253IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-18155242IPR015300DNA-binding pseudobarrel domain
CDDcd100175.75E-21155241No hitNo description
PfamPF023628.8E-14155236IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898155253IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-19155236IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHNSSRCGL ESSPEKSTNN  60
EIGTAPSRGP INTAPTNKKT RYTGSSTKSI YARHLGRKER CTFPGEVKFE TEFDGAIMDE  120
GDFSPPPTCD NGPLTQFEKA NAVAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH  180
HLKENTDIIL RINKRTWRTR YNYHKNRDCG GLSGGWKCFV NDNNLIEHDV CVFEPSNIGG  240
KSIILDIIII RVMDSAVQAP VPLTITHPAS C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631487.10.0PREDICTED: B3 domain-containing protein REM16-like isoform X3
RefseqXP_017631693.10.0PREDICTED: B3 domain-containing protein REM16-like isoform X3
TrEMBLA0A0B0NG640.0A0A0B0NG64_GOSAR; B3 domain-containing REM16-like protein
STRINGGorai.009G207400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-31B3 family protein