PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_34546_BGI-A2_v1.0 | ||||||||
Common Name | F383_11151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 271aa MW: 30466.5 Da PI: 8.3253 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.8 | 3.1e-16 | 155 | 236 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f v++p +v ++ + +p +++h +k+++ +++l + r+W+ +++y k+++ l++GWk Fv++n+L e D++vF+ Cotton_A_34546_BGI-A2_v1.0 155 FMVVMKPTHVWRRFYMAIPVAWTAKHHLKENT--DIIL-RINKRTWRTRYNYHKNRDCGGLSGGWKCFVNDNNLIEHDVCVFE 234 778999********************999655..5664.4688*******9977777778**********************9 PP E- CS B3 84 ld 85 + Cotton_A_34546_BGI-A2_v1.0 235 PS 236 54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.3E-12 | 155 | 253 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-18 | 155 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.75E-21 | 155 | 241 | No hit | No description |
Pfam | PF02362 | 8.8E-14 | 155 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.898 | 155 | 253 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-19 | 155 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MFEGQSLCEK GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHNSSRCGL ESSPEKSTNN 60 EIGTAPSRGP INTAPTNKKT RYTGSSTKSI YARHLGRKER CTFPGEVKFE TEFDGAIMDE 120 GDFSPPPTCD NGPLTQFEKA NAVAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH 180 HLKENTDIIL RINKRTWRTR YNYHKNRDCG GLSGGWKCFV NDNNLIEHDV CVFEPSNIGG 240 KSIILDIIII RVMDSAVQAP VPLTITHPAS C |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017631487.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like isoform X3 | ||||
Refseq | XP_017631693.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like isoform X3 | ||||
TrEMBL | A0A0B0NG64 | 0.0 | A0A0B0NG64_GOSAR; B3 domain-containing REM16-like protein | ||||
STRING | Gorai.009G207400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-31 | B3 family protein |