PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_34465_BGI-A2_v1.0 | ||||||||
Common Name | F383_31615 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 429aa MW: 48652.5 Da PI: 4.6373 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.9 | 1e-32 | 51 | 190 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 lp+G++F+P+d+e++++ L+k v+++k ++++ i++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r Cotton_A_34465_BGI-A2_v1.0 51 LPRGVKFDPSDQEIIWHLLTKVgVKDSKphpfINEFIPtIENDdGICYTHPQKLP-GVKEDGSVSHFFHRAIKAYNTGTRKRR 132 799************887777634444476553333333666546**********.677888899****************** PP NAM 77 atk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ + +W++tg++k+v+ +g + g+kk++v+y + + k+ekt+Wvmh+y+l Cotton_A_34465_BGI-A2_v1.0 133 KIHgddfgDVRWHKTGRTKPVFL-DGVQEGCKKIMVLYmtTVKGGKSEKTNWVMHQYHL 190 86555555889************.99************6545777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-37 | 36 | 209 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.219 | 51 | 209 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-14 | 52 | 190 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
TWLVDGNRIA SKIRSASDPG RVTWNSNPTR SCPNCHHIID NSDVNQSWPG LPRGVKFDPS 60 DQEIIWHLLT KVGVKDSKPH PFINEFIPTI ENDDGICYTH PQKLPGVKED GSVSHFFHRA 120 IKAYNTGTRK RRKIHGDDFG DVRWHKTGRT KPVFLDGVQE GCKKIMVLYM TTVKGGKSEK 180 TNWVMHQYHL GTEEDEKDGE YVISKIFHQQ QQPKQGDKTE QDLSETTETM IVRVDPVTPK 240 SVTPDPPRTG RQCHEYDQGQ EYTIPCIDPS AQVFSAKHPT TQYVEDEAQA ECENSSLNDL 300 PAPENHLNEM LDNDDNNDNH AEEDSKWWDG ESQFLLDSQQ LVEGLSLCDE LLQSQSPRRD 360 ADGNEGILDG KPRLSDYAEL GAEHLKKDLE ECQNLEDDPT NIELDTPPEF RLSQLDFASQ 420 DSYTAWGVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ914145 | 0.0 | JQ914145.1 Gossypium hirsutum NAC domain protein 14 (NAC14) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636217.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 1e-179 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0B0N2H2 | 0.0 | A0A0B0N2H2_GOSAR; NAC domain-containing 8-like protein | ||||
STRING | Gorai.008G186300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-171 | NAC family protein |