PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_34432_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GeBP | ||||||||
Protein Properties | Length: 182aa MW: 20561.2 Da PI: 9.31 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 64.9 | 1.8e-20 | 60 | 143 | 2 | 85 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 lfqrl+se+Dei+lL+ ++ + ak+ ++p +d+++fy+fvkk +++v+k q+++K++ + K + +k+ ++ ++s ++ Cotton_A_34432_BGI-A2_v1.0 60 LFQRLFSEDDEIALLKSMLAYSAKKVADPCADMNGFYDFVKKLFHIDVTKAQMMDKLKGISGKVESSTDKKIDELSKSSDSLL 142 69*************************************************************99999995555555555544 PP DUF573 85 d 85 d Cotton_A_34432_BGI-A2_v1.0 143 D 143 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.7E-15 | 61 | 139 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MLSVLFSLFF LFLSFTLSSD RVKYGVLQKR PEKKVGKEGL AIAPVVEEVK KTGEDAKKLL 60 FQRLFSEDDE IALLKSMLAY SAKKVADPCA DMNGFYDFVK KLFHIDVTKA QMMDKLKGIS 120 GKVESSTDKK IDELSKSSDS LLDKKFGVFD MEVEVVEVGL DMVDGEKKTA LKVKWRKLQM 180 VQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ751265 | 6e-77 | JQ751265.1 Gossypium hirsutum GL1-enhancer binding protein (GeBP) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012441856.1 | 9e-98 | PREDICTED: mediator-associated protein 1 | ||||
TrEMBL | A0A2P5S7A1 | 6e-84 | A0A2P5S7A1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G233500.1 | 5e-83 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 4e-15 | DNA-binding storekeeper protein-related transcriptional regulator |