PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_34426_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 321aa MW: 34150 Da PI: 9.644

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_34426_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.2e-38	76	135	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nny+l+qPr+fC++C+ryWt+GGalrnvPvGgg+r+nk+s+ Cotton_A_34426_BGI-A2_v1.0 76 EAALKCPRCESTNTKFCYFNNYNLTQPRHFCRTCKRYWTRGGALRNVPVGGGCRRNKRSK 135 7789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	59	124	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	78	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.413	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MVFSSIPSYL DPPHWQHHTN HQAGPSSGTS GHQLPPPPGP PQPPPAQQPH GGGAAGSIRP 60 GSMTDRARLA NIRMPEAALK CPRCESTNTK FCYFNNYNLT QPRHFCRTCK RYWTRGGALR 120 NVPVGGGCRR NKRSKGSSSK SAVTDDRQTA SSSSKSSGST DILGLGTQVP PLRFMSPLHN 180 LTDFGLNYGT ISAPVGGPSD LSFQIASTWS GGATAAPGMI GWEQWRLQQA PQFPFLGGLE 240 SSSGLYQFET VGVEPSGHGG GPKISSSAAT QMASVKMDGN TQQELNLSKQ FLGVPGNDEY 300 WGGTAWTDLS RFSSSSTSNP L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017614674.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A1U8HM01	0.0	A0A1U8HM01_GOSHI; dof zinc finger protein DOF5.1-like isoform X1
STRING	Gorai.012G103400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	8e-44	DNA binding with one finger 2.4