PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34402_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 213aa    MW: 23436.5 Da    PI: 7.5667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34402_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.2e-154997255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                 ykGVr++  + +Wv+e+r+p   +k+ r++lg+f ++ +Aaka++aa++ l+g
  Cotton_A_34402_BGI-A2_v1.0 49 IYKGVRRR--NEKWVSEVREP---NKKSRIWLGTFSSPVMAAKAYDAAALTLKG 97
                                69***854..68*****9998...347**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-104897IPR001471AP2/ERF domain
CDDcd000185.87E-1748107No hitNo description
PROSITE profilePS5103218.41349105IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1749107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-2649107IPR001471AP2/ERF domain
SMARTSM003803.6E-2749111IPR001471AP2/ERF domain
PRINTSPR003671.8E-65061IPR001471AP2/ERF domain
PRINTSPR003671.8E-687107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKHISVLSSK DHENPCSAPE PGSSSGNVEV QSQKRKAGRK KFQETRHPIY KGVRRRNEKW  60
VSEVREPNKK SRIWLGTFSS PVMAAKAYDA AALTLKGVSA SLNFPDSAYA LPRAKSSSIR  120
DIQSAAMQAA SEGFGGHAKA SSPLPLLSSY PPPLPCSESS KILFVDEEEV FNMPGILDSM  180
AEGLILTPPA MQKGYYYWED DLDDFVELNL WGD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690873.11e-154PREDICTED: dehydration-responsive element-binding protein 1F-like
TrEMBLA0A2P5SRG31e-156A0A2P5SRG3_GOSBA; Uncharacterized protein
STRINGGorai.009G406800.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-42C-repeat-binding factor 4