PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34381_BGI-A2_v1.0
Common NameF383_06634
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 785aa    MW: 88629.4 Da    PI: 5.0799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34381_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.92.1e-1144057791373
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lL+ cA+avs++d++ a +lL++++e++sp gd +qRla+yf+++L+ar+ +s++ + +   + ++++++ ++ l+++k 
  Cotton_A_34381_BGI-A2_v1.0 405 LRTLLILCAQAVSANDHRTAGELLKQIKENSSPLGDGTQRLAHYFANGLEARMDGSGTVMQNFYMSLASKKTTAADMLKSYKG 487
                                 5789***************************************************999888888888888888********** PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 +  ++P+ k+  + aN++I+  +e+++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+sg   +e++e+tg+r
  Cotton_A_34381_BGI-A2_v1.0 488 YLSACPFKKLPIFFANKMIYYMTEKASALHIVDFGILYGFQWPVLIQHLSNRPGGPPKLRITGIELPQSGfrPTERIEATGRR 570
                                 *********************************************************************9************* PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 La+++e+++vpfe+++++a+++e++++e+++++++E+laVn+ ++ ++llde+++++ +r++vLkl+++++P+++v++  + +
  Cotton_A_34381_BGI-A2_v1.0 571 LANYCERFNVPFEYKAIAAQNWENIRIEDIKINNNEVLAVNSLFRFENLLDETAEVDCPRNAVLKLIRRMNPDIFVHSIINGS 653
                                 *********************************************************************************** PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +ns+ F++rf eal + s++fd+++++lpr++ +r + E el g+e+vnvvaceg +r++r et+++W+ r+++aGFkp+pl+
  Cotton_A_34381_BGI-A2_v1.0 654 YNSPFFVTRFREALFHLSSVFDMFDNTLPRDEPARLMFESELYGQEAVNVVACEGPARVQRPETYKQWQIRMTRAGFKPLPLN 736
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 ++ +++ ++ l+  + + + ++e++++l++gWk+r L++ S+W
  Cotton_A_34381_BGI-A2_v1.0 737 QELMTKLRHKLKAWYHKDFVIDENNHWLLQGWKGRILYASSCW 779
                                 ***************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.802379760IPR005202Transcription factor GRAS
PfamPF035147.2E-112405779IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MKPKFTEFSD YINGFSVEDL DDTFQLNSGQ YSNGTIGFEF NDPSPDLNVL NMNVAVAPSE  60
PDPVTFVQPL TVSTDGSSIS TSTGWSPEGE SLSPSDDNDS TDPVLKYITQ MLMEENMEEP  120
HMFNNYFALK DTEKSLYEVL VEPYPQTSEP QPLLNLNLEA PESNLSGSTN GHSSANIGTN  180
YGTGNYSDHQ VVGEVWESPS SLSQPPLTGD YDFQRALQQP SSQVSVKSTN SLSNPGNRTM  240
ESSISKLLAQ NIFNDKESVL QFQRGFEEAS KFLPSSNQLM IGLESNAFPT GQKGKVPNDV  300
VKVGEDEREN PRERLRGRKN HGRDLEDLEE ERSNKQSATY TDESELSEMF DKVLLYPVGQ  360
FICCNDNENV QHTENKALRQ KEQSNGSSAG KPRSKKQGKK ETVDLRTLLI LCAQAVSAND  420
HRTAGELLKQ IKENSSPLGD GTQRLAHYFA NGLEARMDGS GTVMQNFYMS LASKKTTAAD  480
MLKSYKGYLS ACPFKKLPIF FANKMIYYMT EKASALHIVD FGILYGFQWP VLIQHLSNRP  540
GGPPKLRITG IELPQSGFRP TERIEATGRR LANYCERFNV PFEYKAIAAQ NWENIRIEDI  600
KINNNEVLAV NSLFRFENLL DETAEVDCPR NAVLKLIRRM NPDIFVHSII NGSYNSPFFV  660
TRFREALFHL SSVFDMFDNT LPRDEPARLM FESELYGQEA VNVVACEGPA RVQRPETYKQ  720
WQIRMTRAGF KPLPLNQELM TKLRHKLKAW YHKDFVIDEN NHWLLQGWKG RILYASSCWV  780
PAEES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-4741278125379Protein SCARECROW
5b3h_D5e-4741278125379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633532.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_017633533.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0B0PIF20.0A0A0B0PIF2_GOSAR; Scarecrow-like protein 14
STRINGGorai.001G111600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]