PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34286_BGI-A2_v1.0
Common NameF383_27127
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 369aa    MW: 40944.9 Da    PI: 6.5833
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34286_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-072051435
                    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                                ++C+++++  + +fC++++ ++C +C + +H+
  Cotton_A_34286_BGI-A2_v1.0 20 KTCDTCKSAAAAIFCRSDSAFMCLNCDSRIHS 51
                                79*****************************4 PP
2zf-B_box27.37.4e-0964109342
                    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                  ++C+ +e+ ++   C+ +   lC  C + +H+       H++vp+
  Cotton_A_34286_BGI-A2_v1.0  64 VWMCEVCEQAPAAVTCKADAAALCVACDSDIHSAnplarrHERVPV 109
                                 689*****************************66899999*99986 PP
3CCT70.15.6e-24292336145
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                                 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++e
  Cotton_A_34286_BGI-A2_v1.0 292 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRSE 336
                                 9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.671766IPR000315B-box-type zinc finger
SMARTSM003364.6E-41752IPR000315B-box-type zinc finger
CDDcd000216.70E-72266No hitNo description
PROSITE profilePS5011910.80862109IPR000315B-box-type zinc finger
SMARTSM003363.5E-1562109IPR000315B-box-type zinc finger
PfamPF006436.3E-764109IPR000315B-box-type zinc finger
CDDcd000212.76E-965109No hitNo description
PROSITE profilePS5101716.817292334IPR010402CCT domain
PfamPF062035.7E-18292334IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVIDTTNVKG LTGRWGMAAK TCDTCKSAAA AIFCRSDSAF MCLNCDSRIH SVNDKLVSCR  60
HERVWMCEVC EQAPAAVTCK ADAAALCVAC DSDIHSANPL ARRHERVPVQ PFFDSADSIV  120
KSSPFSFLVP TDPNTGSNCQ QEDVEMGSWL LPNPKLTMET NHVKTGDFFF SDMDPFIDFE  180
YQDSFQQHHD GAMDSVVPVQ TKPAIISMIN NENCFDVDFC RSKFPTFSYQ TKSQSHSVSS  240
SSLEVGVVPD GNSVSDISYT LGRTMGDPSA PIWAATSNNQ PPPQAQVGGM DREARVLRYR  300
EKRKNRKFEK TIRYASRKAY AESRPRIKGR FAKRSETDNE VDHMYNSASS AATAAAFMYD  360
NQYGIVPSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2020560.0KM202056.1 Gossypium darwinii CONSTANS-like 7 protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736434.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
RefseqXP_017603421.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-127COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A0B0MW410.0A0A0B0MW41_GOSAR; Zinc finger CONSTANS-LIKE 5-like protein
TrEMBLA0A0D3R2D20.0A0A0D3R2D2_GOSBA; CONSTANS-like 7 protein
TrEMBLA0A0D3R2F40.0A0A0D3R2F4_GOSMU; CONSTANS-like 7 protein
TrEMBLA0A0D3R2N80.0A0A0D3R2N8_GOSHI; CONSTANS-like 7 protein
TrEMBLA0A0D3R2P40.0A0A0D3R2P4_GOSHI; CONSTANS-like 7 protein
TrEMBLA0A0D3R2R70.0A0A0D3R2R7_9ROSI; CONSTANS-like 7 protein
TrEMBLA0A0D3R2S40.0A0A0D3R2S4_GOSBA; CONSTANS-like 7 protein
TrEMBLA0A0D3R3370.0A0A0D3R337_GOSHI; CONSTANS-like 7 protein
TrEMBLA0A0D3R3520.0A0A0D3R352_GOSTO; CONSTANS-like 7 protein
TrEMBLA0A0D3R3910.0A0A0D3R391_GOSHI; CONSTANS-like 7 protein
TrEMBLA0A0D3R3A20.0A0A0D3R3A2_GOSBA; CONSTANS-like 7 protein
STRINGGorai.004G102000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-122CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]