PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_34107_BGI-A2_v1.0

Common Name

F383_32281

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 312aa MW: 35491.9 Da PI: 4.8857

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_34107_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	1e-08	245	278	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +L++ +gL+++q+ +WF N+R ++ Cotton_A_34107_BGI-A2_v1.0 245 WPYPTEEDKLKLSEITGLDQKQINNWFINQRKRH 278 58*****************************885 PP
2	ELK	37.1	6.8e-13	198	219	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ++K +L+rKYsgyL+sL++EF+ Cotton_A_34107_BGI-A2_v1.0 198 DIKGMLMRKYSGYLSSLRKEFL 219 58*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	7.3E-17	60	104	IPR005540	KNOX1
Pfam	PF03790	3.1E-18	62	102	IPR005540	KNOX1
SMART	SM01256	2.1E-24	107	158	IPR005541	KNOX2
Pfam	PF03791	1.5E-24	110	157	IPR005541	KNOX2
PROSITE profile	PS51213	10.58	198	218	IPR005539	ELK domain
Pfam	PF03789	1.1E-9	198	219	IPR005539	ELK domain
SMART	SM01188	2.4E-6	198	219	IPR005539	ELK domain
PROSITE profile	PS50071	12.276	218	281	IPR001356	Homeobox domain
SMART	SM00389	1.2E-12	220	285	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.35E-19	220	290	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-27	223	283	IPR009057	Homeodomain-like
CDD	cd00086	4.33E-12	230	282	No hit	No description
Pfam	PF05920	6.7E-17	238	277	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	256	279	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEDLYRLDDP IISCSNGIAR VNNFATPNFT ATDFLSPVDH LLQFDDQEVD TDATGSHMSG 60 LIKSQISNHP RYLNLVSAYI ECQKVGAPPK LASLLEEIGR ENRSVNACSE IGADPELDEF 120 MESYCEVLHR YKEELSKPFN EATTFLSNIK SQLSDLCKEA LTKNLDYPFD EGGGSSVEEL 180 SGGEVEGFEN QDECGRQDIK GMLMRKYSGY LSSLRKEFLK KRKKGKLPKE ARVTLLDWWN 240 NHYRWPYPTE EDKLKLSEIT GLDQKQINNW FINQRKRHWK PSEDMKFALM EGFAGDPMHF 300 GHGVGPGSDN IC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	222	LRKEFLKKRK
2	219	223	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269\|PubMed:10488233}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609098.1	0.0	PREDICTED: homeobox protein knotted-1-like 1
Swissprot	Q9FP29	2e-90	KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBL	A0A0B0MZZ0	0.0	A0A0B0MZZ0_GOSAR; Homeobox protein knotted-1-like 1
STRING	Gorai.013G129400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM835	27	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	4e-72	KNOTTED1-like homeobox gene 6

Publications ? help Back to Top
Park SH, et al. A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta, 2007. 227(1): p. 1-12 [PMID:17624547]