PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_34090_BGI-A2_v1.0 | ||||||||
Common Name | F383_18524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 800aa MW: 87016.3 Da PI: 6.7798 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.1 | 3.4e-09 | 569 | 606 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+++qV++WF N R + Cotton_A_34090_BGI-A2_v1.0 569 FEHflHPYPSDADKLLLARQTGLSKNQVSNWFINARVR 606 664459******************************88 PP | |||||||
2 | BELL | 111.9 | 3.5e-36 | 428 | 500 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeV.dkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+e d+rY++y+eq+qtv++sF+ v+g g+a pYt+lA ka+SrhF+cLkdai+ q+ Cotton_A_34090_BGI-A2_v1.0 428 DRIEHQRRKVKLLSMLDEAcDRRYNHYCEQMQTVVNSFDLVMGFGAAVPYTALAKKAMSRHFKCLKDAITAQL 500 589*************9962789***********************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.9E-74 | 359 | 498 | IPR006563 | POX domain |
Pfam | PF07526 | 5.4E-48 | 364 | 497 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.584 | 547 | 610 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.45E-13 | 550 | 611 | No hit | No description |
SMART | SM00389 | 6.6E-10 | 550 | 614 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-17 | 552 | 617 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-28 | 553 | 616 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-17 | 567 | 606 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 800 aa Download sequence Send to blast |
DHEEEDIDMG IATSPVTPSI LHQIPFQEKS NHSTNSMSQD YHHQAAAGIF SFSNGFERSA 60 MSHQEQHQHQ QQQQQHLVQQ IRRDKQRVQG FEPPSLPLVG IESNALPVYE AEGMLSEMFD 120 FPTGVAASAE LLDQHVEPNY RAHRPPSNSN EWFSNRRGVV GGLGLVGESK NHDNRDTLAA 180 QQQHQQLPSI NADSAAAMNL FLMNPQPRSP SPPAPPSSSS NTLHMLLPNP STSLQGFNVS 240 GPAGGTFRTT STVLSPPQFT WVPNSAHEGD DTGSQLNNSS QIGGVIEGQG LSLSLSSSLL 300 HLEAAKAEEL RMYYNQEAGS SSAAAAQFHY KNLATHNHHN LQGGVGENHQ VHVGFGSSLG 360 MVNVIRNSKY VKAAQQLLEE FCSVGRGNFK RNKSGRNNTN PTFNLPGSNG DGGSSSSTKD 420 PPPLSTADRI EHQRRKVKLL SMLDEACDRR YNHYCEQMQT VVNSFDLVMG FGAAVPYTAL 480 AKKAMSRHFK CLKDAITAQL KHSCEALGEK DGAGNSGITM GETPRLRVLE QSLRQQRAFH 540 QMGMVEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKLLLARQTG LSKNQVSNWF 600 INARVRLWKP MVEDMYQQEI KEEDEDNNEG HNGNSAQKST PSTTAGAAAS TPSEPPPTTA 660 AAGGKRSEIN AMKNDPSLIA INRQGFSENQ AKQCTNHDTS ATNTTIIATG PPPPTTFKAT 720 ATEVAPPFSY GVDGTTTCRR GSIVSADYGT TTRPGNDSDI GSTLIRFGTT TGDVSLTLGL 780 RHAGNMPENT SSFSVRDVGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-16 | 556 | 613 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 556 | 613 | 1 | 58 | Homeobox protein Meis1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017638117.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_017638118.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_017638119.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_017638120.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Swissprot | Q9SW80 | 1e-156 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A1U8LFB7 | 0.0 | A0A1U8LFB7_GOSHI; BEL1-like homeodomain protein 4 | ||||
STRING | Gorai.008G070800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-153 | BEL1-like homeodomain 2 |
Publications ? help Back to Top | |||
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