PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_33891_BGI-A2_v1.0

Common Name

F383_11828

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 981aa MW: 108120 Da PI: 6.3479

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_33891_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.1	4e-24	612	712	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg..................................................vclTvLKr 34 ek+isle+l++yF++++kdAAk++g vc+T+LKr Cotton_A_33891_BGI-A2_v1.0 612 EKTISLEVLRQYFAGSLKDAAKSIGarflplhsyrhisvtvpyfglifanavvihtlavcsilsqrelnrihsiaVCPTTLKR 694 799****************************************************************************** PP RWP-RK 35 iCRqyGIkRWPhRkiksl 52 iCR++GI RWP+Rkik++ Cotton_A_33891_BGI-A2_v1.0 695 ICRHHGITRWPSRKIKKV 712 **************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	1.8E-20	614	712	IPR003035	RWP-RK domain
PROSITE profile	PS51519	11.672	646	732	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-24	877	969	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-23	881	964	No hit	No description
SMART	SM00666	2.9E-26	883	966	IPR000270	PB1 domain
PROSITE profile	PS51745	26.202	883	966	IPR000270	PB1 domain
Pfam	PF00564	5.4E-17	884	965	IPR000270	PB1 domain
CDD	cd06407	1.94E-44	884	965	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence Send to blast
MEGDGAVPSD FSPNSTFVDA AMDLDLMDEL LFEGCWLETN DDFNFMQPAP STSNDLNKSS 60 TVPSNANLHQ MHQGETERSV SPPRDGSAVG NASSLLQPGT FIVQGTELGS RWWIGPSAES 120 GSSLSVKERL MQAIGYLKES TKDRDLLIQI WVPVNREGKH VLTTEGQPYS LNSNCKSLEI 180 FRDVSKSYNF PAEEDTKESV GLPGRVFLEK LPEWTPDVRF FRSEEYPRIS FAEKYNVGGS 240 LALPVFERAN GTCLGVVEIV TTIQKSNYRP ELEHVCKALE AVDLRSSPNF TPPNVEACNE 300 LYQAALPEIA EVLRSVCKTY KLPLALTWAP CLNQGKSGCR HSYENFYHCV STVDAACFVA 360 DEEFSEFLEA CSEHHMFRGQ GVVGRAFTTN KQCFATDITA FSKTNYPLSH HARMFGLRGA 420 VAIPLQSIFT GLVEFVLELF LPKDCHDSEA QKQMLNSLSS FMQQACQSLH VVVDKMLEEE 480 VILPVKEVVV ASDGRSDNEE TQFTVSSAKE NSPEESSWIA HMMEAQQKGK GVSVSWEYQK 540 EEPKEEFKVT THWEDTQLEL HDKEVLSDFQ QLHQNAESNA SVEGGGGDSS SSGGRGVLPS 600 KRAGEKRRTK MEKTISLEVL RQYFAGSLKD AAKSIGARFL PLHSYRHISV TVPYFGLIFA 660 NAVVIHTLAV CSILSQRELN RIHSIAVCPT TLKRICRHHG ITRWPSRKIK KVGHSLRKLQ 720 LVIDSVQGAK GAIQIGSFYS SFPELSSPNL SGNGPSSSLK ISGHSKPSEP QLENCMFSQG 780 AAAPKSPSSS CSRSSGSSTC CSMGVKQHST SISALCSSDG LIVEDPGGAL KRARSDAELH 840 SLNQEEPKLL ARSQSHKTLG ELPPLETQPG PKTGGQNLRT GGAFRVKATF GEVKIRFSLQ 900 PSWGFRDVQQ EIAKRFKIED VSRMCLKYLD DDNEWVLLTC DADLEECRDI YKSSQSHTIK 960 ISLHQASHPN LGSSFGSSAP L

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence Send to blast

MEGDGAVPSD FSPNSTFVDA AMDLDLMDEL LFEGCWLETN DDFNFMQPAP STSNDLNKSS  60
TVPSNANLHQ MHQGETERSV SPPRDGSAVG NASSLLQPGT FIVQGTELGS RWWIGPSAES  120
GSSLSVKERL MQAIGYLKES TKDRDLLIQI WVPVNREGKH VLTTEGQPYS LNSNCKSLEI  180
FRDVSKSYNF PAEEDTKESV GLPGRVFLEK LPEWTPDVRF FRSEEYPRIS FAEKYNVGGS  240
LALPVFERAN GTCLGVVEIV TTIQKSNYRP ELEHVCKALE AVDLRSSPNF TPPNVEACNE  300
LYQAALPEIA EVLRSVCKTY KLPLALTWAP CLNQGKSGCR HSYENFYHCV STVDAACFVA  360
DEEFSEFLEA CSEHHMFRGQ GVVGRAFTTN KQCFATDITA FSKTNYPLSH HARMFGLRGA  420
VAIPLQSIFT GLVEFVLELF LPKDCHDSEA QKQMLNSLSS FMQQACQSLH VVVDKMLEEE  480
VILPVKEVVV ASDGRSDNEE TQFTVSSAKE NSPEESSWIA HMMEAQQKGK GVSVSWEYQK  540
EEPKEEFKVT THWEDTQLEL HDKEVLSDFQ QLHQNAESNA SVEGGGGDSS SSGGRGVLPS  600
KRAGEKRRTK MEKTISLEVL RQYFAGSLKD AAKSIGARFL PLHSYRHISV TVPYFGLIFA  660
NAVVIHTLAV CSILSQRELN RIHSIAVCPT TLKRICRHHG ITRWPSRKIK KVGHSLRKLQ  720
LVIDSVQGAK GAIQIGSFYS SFPELSSPNL SGNGPSSSLK ISGHSKPSEP QLENCMFSQG  780
AAAPKSPSSS CSRSSGSSTC CSMGVKQHST SISALCSSDG LIVEDPGGAL KRARSDAELH  840
SLNQEEPKLL ARSQSHKTLG ELPPLETQPG PKTGGQNLRT GGAFRVKATF GEVKIRFSLQ  900
PSWGFRDVQQ EIAKRFKIED VSRMCLKYLD DDNEWVLLTC DADLEECRDI YKSSQSHTIK  960
ISLHQASHPN LGSSFGSSAP L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056268	5e-32	KX056268.1 Citrus trifoliata transcription factor NLP2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017623180.1	0.0	PREDICTED: protein NLP2-like isoform X1
Refseq	XP_017623181.1	0.0	PREDICTED: protein NLP2-like isoform X1
Refseq	XP_017623183.1	0.0	PREDICTED: protein NLP2-like isoform X1
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A2P5WFA2	0.0	A0A2P5WFA2_GOSBA; Uncharacterized protein
STRING	Gorai.002G206700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein