PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33782_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 359aa    MW: 39654.9 Da    PI: 6.372
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33782_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20171220255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Cotton_A_33782_BGI-A2_v1.0 171 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 220
                                 59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.16E-34170230No hitNo description
SuperFamilySSF541713.66E-23171229IPR016177DNA-binding domain
PROSITE profilePS5103223.143171228IPR001471AP2/ERF domain
SMARTSM003807.0E-38171234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-32171229IPR001471AP2/ERF domain
PfamPF008473.6E-14172220IPR001471AP2/ERF domain
PRINTSPR003673.5E-11172183IPR001471AP2/ERF domain
PRINTSPR003673.5E-11194210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAATTDFYSS SSDIYGGELM EALEPFMKSA SSSSSSSSSS SSSSSSSYSP SPSSYSPSPS  60
PSPSPSTSYL SLSSSQTQPN FYADGCYFPA VDQYPGVQQP QIGSTIGLNN LTQAQINQIQ  120
AQFLFQNNQP SYLYQNPQLN ANPNTNHMLS FLSPKPVPMK QMGSPPKPTK LYRGVRQRHW  180
GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDKAAYKLRG DFARLNFPNL RHQGSHIGGE  240
FGEYKPLHSS VDAKLQAICE SLELNQKQAN NKKTKKLSKE NKVQLAEPEE KTVKVENSPS  300
SLSPVLSENE GSTESSPLSD LTFSDFNEQP WPEVITSSES FMLSKYPSYE IDWDSILKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22170228160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646159.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E41e-102RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1U8PT600.0A0A1U8PT60_GOSHI; ethylene-responsive transcription factor RAP2-13-like
STRINGGorai.010G043200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-78related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]