PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_33618_BGI-A2_v1.0 | ||||||||
Common Name | F383_27258 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27798.6 Da PI: 8.6788 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Cotton_A_33618_BGI-A2_v1.0 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 93.4 | 3.9e-31 | 84 | 175 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 + ea + s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qL++slk iRs++++++l+q+ +lq+ke+ l+e+n Cotton_A_33618_BGI-A2_v1.0 84 TREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDSSLKLIRSTRTQYMLDQLTDLQRKEHLLNEAN 166 556666789************************************************************************** PP K-box 92 kaLrkklee 100 k+L+++l+e Cotton_A_33618_BGI-A2_v1.0 167 KSLKQRLME 175 *****9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-34 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.72E-46 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 8.6E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.043 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.0E-25 | 91 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMMKTLERY QKCSHGAPET NVSTREALEL SSQQEYLKLK ARYEALQRSQ RNLLGEDLGP 120 LSSKELESLE RQLDSSLKLI RSTRTQYMLD QLTDLQRKEH LLNEANKSLK QRLMEGYQVH 180 SLQLNPNADD VGYGRQPTHQ PQGDVFFHPL DCEPTLQIGY QPDTISAVTG CPSVNNYMTG 240 WLP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-45 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-45 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-45 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-45 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM236432 | 0.0 | HM236432.1 Gossypium hirsutum MADS16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313655.1 | 0.0 | agamous-like MADS-box protein AGL9 homolog | ||||
Refseq | XP_017646984.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL9 homolog | ||||
Swissprot | Q8LLR0 | 1e-158 | MADS4_VITVI; Agamous-like MADS-box protein MADS4 | ||||
TrEMBL | A0A0B0PFJ8 | 1e-180 | A0A0B0PFJ8_GOSAR; Agamous-like MADS-box protein AGL9 | ||||
TrEMBL | A0A2P5XXV2 | 1e-180 | A0A2P5XXV2_GOSBA; Uncharacterized protein | ||||
TrEMBL | V9I2A3 | 1e-180 | V9I2A3_GOSHI; MADS16 | ||||
STRING | Gorai.005G165000.1 | 1e-176 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6220 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-128 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|