PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33555_BGI-A2_v1.0
Common NameF383_34055
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 562aa    MW: 62592.6 Da    PI: 5.6814
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33555_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.6e-5491371128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lp GfrF+Ptdeel+++yL++k++gk++++ evi+e+d++k+ePwdLp+  ++++++ ew+fF++ d+ky++g+r nratk+g
  Cotton_A_33555_BGI-A2_v1.0   9 LPTGFRFRPTDEELIDFYLRAKINGKRNDEVEVIREIDVCKCEPWDLPHmsAIETRDPEWFFFCPLDRKYPNGNRLNRATKAG 91 
                                 699************************9999*****************4346777888************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatgkd++++s +++l+g+kk+Lvfy+grap+g++t+Wvmheyr 
  Cotton_A_33555_BGI-A2_v1.0  92 YWKATGKDRKIKS-GSSLIGMKKSLVFYTGRAPRGKRTNWVMHEYRT 137
                                 *************.99*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-584160IPR003441NAC domain
PROSITE profilePS5100557.2629160IPR003441NAC domain
PfamPF023652.8E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAVLSLNSLP TGFRFRPTDE ELIDFYLRAK INGKRNDEVE VIREIDVCKC EPWDLPHMSA  60
IETRDPEWFF FCPLDRKYPN GNRLNRATKA GYWKATGKDR KIKSGSSLIG MKKSLVFYTG  120
RAPRGKRTNW VMHEYRTTLI ELDGTKPGQN PFVICRLFKK QDESIEDTNG DEVDVSSPTE  180
DMQSELEGPQ DSPALEGVAQ PKFPHNNGTF SWGPPNDVVS NAVPPMLECN IVDSKAYSVT  240
GQVAEIVTDK VDQVGEALNH FYDPMVEPPD RKFFSPLRSH VEAEQAPWTF HQVGSSLSAV  300
EVEHETNKND ASISDFLNSI LNNSDDYYSV DSSSQQYSAN ESETPKTMAV VEDGRIRSEQ  360
DAEVAQVLMI GSQLGREIAD KGTPLEIKAT AQDCTIPINK DIVLNSKEEP SNHVTTTCNL  420
DNAITGIRIR SHAAQSQPNT ENSVTQGYAP RRIRLQCKLQ VGTYYSEGKK HGSKPVVTKD  480
VKVMEQNIVS GTDAACGTMD IPHEISLSES SIKGFLKSKA IVSAGCSKQF STSRWHKQFA  540
VMFQVALMLL LLLVLVSKMN IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-45816314171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624517.10.0PREDICTED: NAC domain-containing protein 62
TrEMBLA0A0B0N8S30.0A0A0B0N8S3_GOSAR; NAC domain-containing 78-like protein
STRINGGorai.004G125900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.18e-91NAC domain containing protein 62