PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_33477_BGI-A2_v1.0 | ||||||||
Common Name | F383_25955 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 33939.5 Da PI: 6.6692 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.8 | 1.2e-50 | 10 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lp+GfrF Ptdeelv++yL++k++++++ + +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g r+nra+ sgyW Cotton_A_33477_BGI-A2_v1.0 10 LPAGFRFYPTDEELVMHYLCRKCASQSIAV-PFIAELDLYKYDPWDLPDLALYGEKEWYFFSPRDRKYPNGLRPNRAAGSGYW 91 799************************999.88***************65556799*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg dk++ + + vg+kk Lvfy g+apkgekt+W+mheyrl Cotton_A_33477_BGI-A2_v1.0 92 KATGADKPIGQ--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 134 *********98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-61 | 7 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.009 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 11 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MTATELQLHL PAGFRFYPTD EELVMHYLCR KCASQSIAVP FIAELDLYKY DPWDLPDLAL 60 YGEKEWYFFS PRDRKYPNGL RPNRAAGSGY WKATGADKPI GQPKPVGIKK ALVFYAGKAP 120 KGEKTNWIMH EYRLADVDRS VRKKNSLRLD DWVLCRIYNK KGCIEKQPTR GSVTKKASVT 180 EIEESKPDIG TLGVETCEFP PAATAIGNDY VYFDSSESVP RVHTDSSCSE HAVSREFMTE 240 VQSVPKWKEE LGMANNNALE FAYNYLDANM DIGFASQMQS SNQLSPYQDI FMYLQKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-78 | 4 | 166 | 9 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC110644 | 0.0 | KC110644.1 Gossypium hirsutum NAC protein 9 (NAC9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017609013.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like isoform X1 | ||||
Refseq | XP_017620855.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like isoform X1 | ||||
Swissprot | Q39013 | 1e-144 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0B0NZN4 | 0.0 | A0A0B0NZN4_GOSAR; NAC domain-containing 2-like protein | ||||
STRING | Gorai.005G088800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-146 | NAC family protein |