PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33386_BGI-A2_v1.0
Common NameF383_01268
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 515aa    MW: 56501.5 Da    PI: 4.5214
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33386_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.9e-36451362102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++
  Cotton_A_33386_BGI-A2_v1.0  45 FLSKTYDMVDDPATDAIVSWSPSNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANE 118
                                 9********************999*****************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                  F +g+k+ll++i r+k 
  Cotton_A_33386_BGI-A2_v1.0 119 GFLRGQKHLLRNISRRKP 136
                                 ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-3641134IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-4041134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6541134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-214568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-218395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-2196108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MDGVSSSGNS QNDASTSGGE SQTTAQPQTA PKPVPVQSVN TPPPFLSKTY DMVDDPATDA  60
IVSWSPSNNS FVVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF  120
LRGQKHLLRN ISRRKPAHGH GHQQTQQSHG QSSSVGACVE VGKFGLEEEV ERLKRDKNVL  180
MQELVRLRQQ QQATDNQLQA MVQRLQGMEQ RQQQMMSFLA KAMQSPGFLA QFVQQQNESN  240
RRISEANKKR RLKQDGNDTS AASDGQIIKY QPLNEAKEML MQIMKGDSSP RLDSFNKNHE  300
NFLIGDGVSA SSGLDGGNSA SRVSGVTLKE VPPTSGCSTY VPATSWIPGH SPSAAISEIQ  360
PSPCTTSSEE ITTSRFPDMS ALVGAQKPAS MSIPQTDISM PEASEMPEMV QESIVDIPAE  420
NYVESETGNG GFIDPSTLVV NGSIPFQLDD LPDIDAFWED LLVPSPEPED IESTPMDSKG  480
EGNEGQPMDK GWDESQHMDN LTEQMGLLGS DNNGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-294313418120Heat shock factor protein 1
5d5u_B3e-294313427129Heat shock factor protein 1
5d5v_B3e-294313427129Heat shock factor protein 1
5d5v_D3e-294313427129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246253NKKRRLKQ
2247252KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024490.0KJ702449.1 Gossypium hirsutum heat shock transcription factor (HSF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611064.10.0PREDICTED: heat shock factor protein HSF8-like
SwissprotQ401521e-175HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0B0N0780.0A0A0B0N078_GOSAR; Heat shock factor HSF8
STRINGGorai.003G183900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-139heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]