PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33275_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 254aa    MW: 29162.5 Da    PI: 6.2542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33275_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.5e-09143186755
                                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 ++ r RR++i ++  eL +l+P        K++ ae+L+ A +YIk+Lq
  Cotton_A_33275_BGI-A2_v1.0 143 IAARERRRKITKKTRELGKLVPGG-----SKMNTAEMLQSAFKYIKYLQ 186
                                 56799*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.39E-9134188No hitNo description
SuperFamilySSF474591.03E-11135194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.805136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-10142190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-10142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-7144186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVLSSYFDWQ TDVPMYERKT VEAESETQLA AADGLECYWN AFELPYTFPA SYLDPHHYTS  60
LLTLYSIPPE VTPYETLSSY PWPKRHKLIE DHYYSDLMPG VFDGVAVSPC PVLEDHQINL  120
EGMKTVGNCN KISEEKCVSV QSIAARERRR KITKKTRELG KLVPGGSKMN TAEMLQSAFK  180
YIKYLQAQAG ILQVMDSFPE NEKRSWDGKM EMVTSPKVQE KLYMEDKCLV RKDVVISLTT  240
LFKPPLSHEL TRLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017621837.10.0PREDICTED: transcription factor bHLH53-like
TrEMBLA0A1U8KI820.0A0A1U8KI82_GOSHI; transcription factor bHLH53-like
STRINGGorai.002G107000.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1695449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-21bHLH family protein