PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33085_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 295aa    MW: 33271.1 Da    PI: 8.4381
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33085_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.15.3e-37101012102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d+ ++++isw+eng+sf+v++  +fak++Lp+yFkh+nf+SFvRQLn+YgF+kv +++         weF+++
  Cotton_A_33085_BGI-A2_v1.0  10 FLTKTYKLVDDPITDDVISWNENGTSFIVWNIADFAKDLLPNYFKHDNFSSFVRQLNTYGFRKVVQDK---------WEFANE 83 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                 +Fk+g+kell++++r+k 
  Cotton_A_33085_BGI-A2_v1.0  84 NFKRGQKELLSEMRRRKA 101
                                 ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-38393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-59699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYKLVDD PITDDVISWN ENGTSFIVWN IADFAKDLLP NYFKHDNFSS  60
FVRQLNTYGF RKVVQDKWEF ANENFKRGQK ELLSEMRRRK AVTPSPVNGK TSAAGPSSPT  120
KSGEDLGSTS TSSLDSKNPG SVETKQETMN VFSNLSNENE KLKKHNELLS SELAQAKKQC  180
DELVAALTER VKVGPDQFNR IMRQGSYDST RDDDDHGRWY SAGDPDDHDH DDDNENGSQD  240
CNGSLKLFGV WLKGAGKKRF PKEKKIVYGE PYAKQMKTVH FNHAGMRMKS GKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2669926129Heat shock factor protein 1
5d5v_B5e-2669926129Heat shock factor protein 1
5d5v_D5e-2669926129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674030.0KR067403.1 Gossypium hirsutum HSF22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641201.10.0PREDICTED: heat shock factor protein HSF24-like
SwissprotP223351e-104HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0D2QLX60.0A0A0D2QLX6_GOSRA; Uncharacterized protein
STRINGGorai.007G053900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-84heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]