PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33039_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 397aa    MW: 45409.4 Da    PI: 7.055
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33039_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.3e-20331131297
                                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                          B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                  ++rl +p kfa+++++k   + t+tl+ +sg  W+v+l+++   ++ ++ +GWk Fvk++ L ++Df++Fk++g s f   v
  Cotton_A_33039_BGI-A2_v1.0  33 FLQRLEIPEKFAKNIKKK--LPETVTLKGPSGSIWDVRLTVDDD-DTLFFNGGWKTFVKDHSLVANDFLIFKYNGVSHF--DV 110
                                 56799*******888755..888****************54443.4599************************998888..66 PP

                                 EEE CS
                          B3  95 kvf 97 
                                  +f
  Cotton_A_33039_BGI-A2_v1.0 111 LMF 113
                                 655 PP
2B345.61.2e-14272352184
                                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                 f  +++p +v+++  + +p   ++++   k   + +++l+  + r+W+ ++ y ++++   l++GW++Fv++n+L+e D++vF
  Cotton_A_33039_BGI-A2_v1.0 272 FMIIMKPTHVGRRFYMAVPTAWVAKYlP-K--DNADVILRM-NKRTWKTRFYYHRSRDCGGLSGGWRNFVNDNNLEEHDVCVF 350
                                 677899********************42.3..334676655.78*******8877776678********************** PP

                                 EE CS
                          B3  83 kl 84 
                                 + 
  Cotton_A_33039_BGI-A2_v1.0 351 QP 352
                                 94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.33E-2221114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.87522116IPR003340B3 DNA binding domain
SMARTSM010191.7E-1625116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-2325114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-2030114No hitNo description
PfamPF023621.2E-1634110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-20268367IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.984272370IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-19272361IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-13272353IPR003340B3 DNA binding domain
CDDcd100174.71E-19272362No hitNo description
SMARTSM010194.2E-12272365IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEDTCKDCRD WEEEIFWTHF QCVHFSQFLH GDFLQRLEIP EKFAKNIKKK LPETVTLKGP  60
SGSIWDVRLT VDDDDTLFFN GGWKTFVKDH SLVANDFLIF KYNGVSHFDV LMFDGKSLCE  120
KASSYFVRKC MHTESDATHQ TKRKVNENSD EILHNSSQCG LESGPEKSTN NDMDARPSRK  180
PINSAASKKK IRNSDNGTRS IHAKQSLVGK ELPTFPGEVK VERLETEYEH TTMDGDGDVF  240
GLWHTTGKRF VTQFEKTNVL LKAQEALTNE GFMIIMKPTH VGRRFYMAVP TAWVAKYLPK  300
DNADVILRMN KRTWKTRFYY HRSRDCGGLS GGWRNFVNDN NLEEHDVCVF QPANIGSKPM  360
ILDVNIFHVL QKAVPLSQVD PLPSSPELIA STPDMDS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703014.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_016703015.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_016703016.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_016703017.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_017638668.10.0PREDICTED: B3 domain-containing protein REM16
RefseqXP_017638669.10.0PREDICTED: B3 domain-containing protein REM16
RefseqXP_017638670.10.0PREDICTED: B3 domain-containing protein REM16
RefseqXP_017638671.10.0PREDICTED: B3 domain-containing protein REM16
TrEMBLA0A1U8KKP60.0A0A1U8KKP6_GOSHI; B3 domain-containing protein REM16-like
STRINGGorai.002G130300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-79B3 family protein