PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33028_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 143aa    MW: 16159.5 Da    PI: 10.2689
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33028_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC461.1e-1411911897
                       NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                                + e+P ar+kki+k d+d++++ +ea  l+s + +lf+  l+ r+   a e+k++t+k   + +av+r   + dfl+d  p
  Cotton_A_33028_BGI-A2_v1.0 11 RPEFPTARVKKIMKLDKDINKVNSEALFLVSCSTNLFLRFLAERTAEVAAEKKKKTVKLDHLRTAVKRHRpTSDFLLDSLP 91
                                5689**************************************************************9975389*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.6E-191376IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.04E-161393IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.0E-201491IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAEDEAVDPI RPEFPTARVK KIMKLDKDIN KVNSEALFLV SCSTNLFLRF LAERTAEVAA  60
EKKKKTVKLD HLRTAVKRHR PTSDFLLDSL PIPAESTQSV ARFATDRDRS RSVGDKSAPA  120
GTRRIDHFFR KPENEAPIQI NDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623434.12e-99PREDICTED: DNA polymerase epsilon subunit C
TrEMBLA0A2P5WSA84e-98A0A2P5WSA8_GOSBA; Uncharacterized protein
STRINGGorai.005G168300.12e-93(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-43nuclear factor Y, subunit C13