PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32941_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 239aa    MW: 27837.7 Da    PI: 6.315
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32941_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.93.1e-26129179252
                      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                 +++++l++++kyF+ pi +AAke++v+lT+LK++CR+++I+RWPhRkiksl
  Cotton_A_32941_BGI-A2_v1.0 129 TASLELDEIQKYFDFPISKAAKEMNVGLTLLKKRCRELNIMRWPHRKIKSL 179
                                 6899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.927119200IPR003035RWP-RK domain
PfamPF020422.1E-22132179IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDLGFAKMEN GSEFDYCFNF EENPFGKVEF EVDSFYDFNS PALLPHPQAD NLCIQFMDFE  60
EISSDFALFD QNEDIMADAI KRVVDSFDHH CGNITNSGGS STEASRVIHE IEYGDSHGEK  120
IRSFRRKRTA SLELDEIQKY FDFPISKAAK EMNVGLTLLK KRCRELNIMR WPHRKIKSLK  180
SLIHNVKELG LTNEIVMLEE HQRMLEKVPD LELTDRTKKL RQACFKANYK KRRSLASCY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5776543e-36JX577654.1 Gossypium hirsutum clone NBRI_GE9518 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622086.11e-174PREDICTED: protein RKD4
TrEMBLA0A2P5YAU41e-175A0A2P5YAU4_GOSBA; Uncharacterized protein
STRINGGorai.003G121600.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125852230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-46RWP-RK domain-containing protein