PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32916_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 379aa    MW: 41582.8 Da    PI: 4.6674
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32916_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.46.5e-0889135551
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                                 k  +r   NReA r++R++ ka+ + Le++v  L a N++L k+l+ 
  Cotton_A_32916_BGI-A2_v1.0  89 KSKKRPLGNREAVRKYREKVKARAASLEDEVVRLRALNQQLVKRLQG 135
                                 77899999**********************************99974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-785152IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.2E-1286153No hitNo description
PfamPF077161.1E-1387142IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.74E-589135No hitNo description
CDDcd146869.43E-1191144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDDGELDFSN QEVFSGNNMG DIPSSCSMDS FFDELLNDSH ACTHTHTCNP PGPDNSHTHT  60
CFHFHTKIVP ASSEDKAAID DTAVSGENKS KKRPLGNREA VRKYREKVKA RAASLEDEVV  120
RLRALNQQLV KRLQGQAALE AEVARLKCLL VDIRGRIEGE IGPFPYQKPA TNVNMMNVPG  180
AYVMNPCNVQ CNDQMYCLHP GVEDKTGEAA ALNGQGFNGC DFDNIQCLAN QNSTGGIGSA  240
GSNGNYSGTK RRKDLIKFTE IELVDDKDVE TIIVLYCGNQ SNQNTPIQLF AKLAGVELIE  300
DLTLLGEEHG VQEPCMVVSI SYVDSQSTIY SIDIDLNVAS ETDVVGDNVY NVMILLITRS  360
IVIVIPMWTR SRMILTTNA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701646.10.0PREDICTED: basic leucine zipper 19-like isoform X1
RefseqXP_016701647.10.0PREDICTED: basic leucine zipper 19-like isoform X1
RefseqXP_016701648.10.0PREDICTED: basic leucine zipper 19-like isoform X2
RefseqXP_017620652.10.0PREDICTED: basic leucine zipper 19-like isoform X1
RefseqXP_017620659.10.0PREDICTED: basic leucine zipper 19-like isoform X1
RefseqXP_017620668.10.0PREDICTED: basic leucine zipper 19-like isoform X1
RefseqXP_017620674.10.0PREDICTED: basic leucine zipper 19-like isoform X2
SwissprotQ8GTS21e-111BZP23_ARATH; Basic leucine zipper 23
SwissprotQ8VY761e-111BZP19_ARATH; Basic leucine zipper 19
TrEMBLA0A2P5YGG50.0A0A2P5YGG5_GOSBA; Uncharacterized protein
STRINGGorai.002G197800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20362879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-113bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Henriques AR,Farias DDR,Costa de Oliveira A
    Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals.
    Genet. Mol. Res., 2017.
    [PMID:28671251]
  4. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]