PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32870_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 34893.5 Da PI: 7.4964 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.7e-52 | 22 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++Pw+Lp+ + +e+ew+fFs+rd+ky++g r+nra++sgyW Cotton_A_32870_BGI-A2_v1.0 22 LPPGFRFHPSDEELIVHYLKNKVTSNPLPA-SIIAEIDLYKYNPWELPTLF--GEDEWFFFSPRDRKYPNGARPNRAAASGYW 101 79****************************.89***************544..789*************************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+d+++l++ +++ +g+kk Lvfykgr pkg+kt+W+mheyrl Cotton_A_32870_BGI-A2_v1.0 102 KATGTDRPILTScGTKSIGVKKALVFYKGRPPKGTKTEWIMHEYRL 147 **********9978889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-61 | 19 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.269 | 22 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 23 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MLGGSSMEEI PAAGNNSSEI QLPPGFRFHP SDEELIVHYL KNKVTSNPLP ASIIAEIDLY 60 KYNPWELPTL FGEDEWFFFS PRDRKYPNGA RPNRAAASGY WKATGTDRPI LTSCGTKSIG 120 VKKALVFYKG RPPKGTKTEW IMHEYRLLET MIWTPKRKGS MRLDDWVLCR VRQKASIQRN 180 SWEDRNISSH EPADSFYVPN SIEPWPSNTN HNVDIGKTYL FNDCPMLPYI FASQDLPCFD 240 TTSSISFQSS YKSCTSLQEA NSGNNNMQIS FSFLQNLFNP LKRESMEEDQ TIWKTVILVH 300 INGIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-67 | 18 | 176 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-67 | 18 | 176 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-67 | 18 | 176 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-67 | 18 | 176 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-67 | 18 | 176 | 13 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-67 | 18 | 176 | 13 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847216 | 0.0 | KC847216.1 Gossypium hirsutum NAC domain protein NAC39 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016739486.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q8GY42 | 4e-79 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A1U8NKF8 | 0.0 | A0A1U8NKF8_GOSHI; NAC domain-containing protein 2-like | ||||
STRING | Gorai.009G418700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17560 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-81 | NAC domain containing protein 25 |