PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32870_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 305aa    MW: 34893.5 Da    PI: 7.4964
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32870_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-52221471128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++Pw+Lp+ +  +e+ew+fFs+rd+ky++g r+nra++sgyW
  Cotton_A_32870_BGI-A2_v1.0  22 LPPGFRFHPSDEELIVHYLKNKVTSNPLPA-SIIAEIDLYKYNPWELPTLF--GEDEWFFFSPRDRKYPNGARPNRAAASGYW 101
                                 79****************************.89***************544..789*************************** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg+d+++l++ +++ +g+kk Lvfykgr pkg+kt+W+mheyrl
  Cotton_A_32870_BGI-A2_v1.0 102 KATGTDRPILTScGTKSIGVKKALVFYKGRPPKGTKTEWIMHEYRL 147
                                 **********9978889***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-6119174IPR003441NAC domain
PROSITE profilePS5100560.26922174IPR003441NAC domain
PfamPF023651.1E-2723147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MLGGSSMEEI PAAGNNSSEI QLPPGFRFHP SDEELIVHYL KNKVTSNPLP ASIIAEIDLY  60
KYNPWELPTL FGEDEWFFFS PRDRKYPNGA RPNRAAASGY WKATGTDRPI LTSCGTKSIG  120
VKKALVFYKG RPPKGTKTEW IMHEYRLLET MIWTPKRKGS MRLDDWVLCR VRQKASIQRN  180
SWEDRNISSH EPADSFYVPN SIEPWPSNTN HNVDIGKTYL FNDCPMLPYI FASQDLPCFD  240
TTSSISFQSS YKSCTSLQEA NSGNNNMQIS FSFLQNLFNP LKRESMEEDQ TIWKTVILVH  300
INGIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-671817613167NO APICAL MERISTEM PROTEIN
1ut4_B3e-671817613167NO APICAL MERISTEM PROTEIN
1ut7_A3e-671817613167NO APICAL MERISTEM PROTEIN
1ut7_B3e-671817613167NO APICAL MERISTEM PROTEIN
4dul_A3e-671817613167NAC domain-containing protein 19
4dul_B3e-671817613167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472160.0KC847216.1 Gossypium hirsutum NAC domain protein NAC39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016739486.10.0PREDICTED: NAC domain-containing protein 2-like
SwissprotQ8GY424e-79NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A1U8NKF80.0A0A1U8NKF8_GOSHI; NAC domain-containing protein 2-like
STRINGGorai.009G418700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17560810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-81NAC domain containing protein 25