PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32808_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 26283.1 Da PI: 9.4298 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.3e-18 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Cotton_A_32808_BGI-A2_v1.0 61 KKKRLTNEQLEWLEMSFQEDIKLDPRRKMKLSRELGLQPRQIAVWFQNRRARWK 114 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 109.4 | 2.5e-35 | 60 | 152 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 ekk+rl++eq++ LE+sF+e+ kL+p+rK++l+reLglqprq+avWFqnrRAR+k+k+lE+ ++aL++++ +++e+++L++e Cotton_A_32808_BGI-A2_v1.0 60 EKKKRLTNEQLEWLEMSFQEDIKLDPRRKMKLSRELGLQPRQIAVWFQNRRARWKAKELERLCNALQHHLHLVSKETQKLQHE 142 69********************************************************************************* PP HD-ZIP_I/II 84 veeLreelke 93 v++L++ l+e Cotton_A_32808_BGI-A2_v1.0 143 VSKLKAMLRE 152 *****98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.167 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-15 | 58 | 120 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-17 | 58 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.6E-16 | 61 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.40E-15 | 61 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-19 | 66 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.9E-5 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.9E-5 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEWNGTLSFV PGQPPSLTSL YNYNYDQYFP GMEMMNVGLA EAAAMEKKKK KKKIYMNNEE 60 KKKRLTNEQL EWLEMSFQED IKLDPRRKMK LSRELGLQPR QIAVWFQNRR ARWKAKELER 120 LCNALQHHLH LVSKETQKLQ HEVSKLKAML REQPTRNQVS TGYTEISGEE TIESTLIHCS 180 NKYMVVPNNH HPIADQCSYL FNVDKNNPNP VGSTYWGEQL PTNP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 52 | KKKKKKK |
2 | 46 | 63 | KKKKKKKIYMNNEEKKKR |
3 | 49 | 63 | KKKKIYMNNEEKKKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614786 | 0.0 | JX614786.1 Gossypium hirsutum clone NBRI_GE58425 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613966.1 | 1e-169 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A2P5WNK0 | 1e-167 | A0A2P5WNK0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G409600.1 | 1e-153 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28463 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 3e-36 | homeobox 51 |