PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32741_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 345aa MW: 37662.8 Da PI: 4.5837 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 123 | 169 | 3 | 53 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 GVr++k +g+W+AeIr+p e ++r++lg+f+t e+Aa+a++a ++++ Cotton_A_32741_BGI-A2_v1.0 123 PVGVRRRK-WGKWAAEIRHPLE---KTRIWLGTFDTLEDAAEAYDAKKLEF 169 68***998.**********965...5********************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.703 | 122 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-11 | 122 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-14 | 122 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-7 | 123 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.24E-21 | 124 | 169 | No hit | No description |
SuperFamily | SSF54171 | 5.95E-16 | 124 | 169 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-20 | 125 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-7 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MPEPRKEASN KNKLYKKSKK TQPILSEDTQ MTRKVRVIFH DPYATDSSSS EDESERTITR 60 KAPRGKLVVR EVGVPILGLV SHSKPLEFEA SSQDSNCKTP TRRKRVLDTT LDDNALVVEA 120 KRPVGVRRRK WGKWAAEIRH PLEKTRIWLG TFDTLEDAAE AYDAKKLEFG ALAVAAAAAA 180 AAAATASSDK TYDISCSAST SHTSNSVASV SEESVSPSSH TTPSSVLELD TSASVAFFNS 240 NHDSGDANKE GFDANFANLV IPDLCFIDDP LLSGSVGQEL NLDEEQSDYL FVNDSGVILE 300 DYCSIEDLSI CGIEGDEPSE LPDCDFSTDD FDFCKKVAHL NILCP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 129 | RPVGVRRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527645 | 1e-130 | HQ527645.1 Gossypium herbaceum clone NBRI_B_EYI1BW404I0CI4 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616655.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
Refseq | XP_017616656.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
Refseq | XP_017616657.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
Refseq | XP_017616658.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
TrEMBL | A0A1U8I9Q1 | 0.0 | A0A1U8I9Q1_GOSHI; ethylene-responsive transcription factor ERF119-like | ||||
STRING | Gorai.013G076100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2537 | 26 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 4e-30 | ERF family protein |