PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32708_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 669aa MW: 74328.2 Da PI: 6.5671 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.4 | 6.8e-05 | 425 | 463 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHH.HHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterq.VkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +q ++WF N R + Cotton_A_32708_BGI-A2_v1.0 425 FEHflHPYPSDVDKHILARQTGLSRSQaCSNWFINARVR 463 554459******************998569*******88 PP | |||||||
2 | BELL | 114 | 7.8e-37 | 287 | 357 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++elq++k+k+ls+leeVd+rYk y++q+++v+ssFeavag g+a +Y +lA+ka+SrhFrcL+d ia+qi Cotton_A_32708_BGI-A2_v1.0 287 FTELQRRKTKMLSMLEEVDRRYKIYCDQMKAVVSSFEAVAGTGAASVYSALASKAMSRHFRCLRDGIASQI 357 679*******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.5E-57 | 222 | 355 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-46 | 228 | 354 | IPR006563 | POX domain |
CDD | cd00086 | 4.09E-8 | 406 | 468 | No hit | No description |
SMART | SM00389 | 0.0019 | 406 | 471 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.17E-13 | 407 | 473 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 409 | 473 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.3E-15 | 423 | 463 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MARESCEDKS RNIVSSTGFC YSDVSSGNST MQTHLVNQIQ GFESNPEIFN LTTGMEMIGF 60 AKNLHQQQGD TNNMIMWKGF SNKHGNNPGA AGPSSSSSKP INESTTDFYQ HEFHKPEFTT 120 GISETSTGNL IVGPESAPWQ ENRLLVDDSS FRCVFPCEGN ERPSQGLSLS LSSSNPTSIG 180 LQSFELRQTS HSNHDDQPDD MRFIGSSSRD GFFGKPAIVQ QHQAQFQIRG SRYLNAAQEL 240 LNEFCSLGAK QLDTSKQKQT QKTTKQWDDD DGGASSSRKQ SLYSLDFTEL QRRKTKMLSM 300 LEEVDRRYKI YCDQMKAVVS SFEAVAGTGA ASVYSALASK AMSRHFRCLR DGIASQIQAT 360 RKAMGEKDTV APGTTKGETP RLRILDQALR QQRAFQQMSM MESHPWRPQR GLPERSVSVL 420 RAWLFEHFLH PYPSDVDKHI LARQTGLSRS QACSNWFINA RVRLWKPMVE EMYLEETKEH 480 ENNMDSSDNG GTDGGDDNNN NGRLNIPLAD QKPTPDQLVR VDSECLSSII TTNPEKNDGK 540 SGTKTLENQH LHHHHHHHQQ QSFGTYGATA MELDFASYGD HTAGGGVPYH NANQSFNGGG 600 GVSLTLGLQQ HGGSGVSLAF SPATQTSLFY PRDHIEDCQP VQYSLLDNEG QHLPYRNLMG 660 AQLLHDLAG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614497 | 0.0 | JX614497.1 Gossypium hirsutum clone NBRI_GE57913 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017603659.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_017603660.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_017603661.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-144 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A1U8NMQ3 | 0.0 | A0A1U8NMQ3_GOSHI; homeobox protein BEL1 homolog | ||||
STRING | Gorai.008G248900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-140 | TALE family protein |
Publications ? help Back to Top | |||
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