PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32694_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 141aa    MW: 15604.3 Da    PI: 7.3452
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32694_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-191363256
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                +ykGVr +k +g+WvAe+r p++   r r++lg++ taeeAa+a++aa  +l+g+
  Cotton_A_32694_BGI-A2_v1.0 13 RYKGVRMRK-WGKWVAEVRQPNS---RGRIWLGSYKTAEEAARAYDAAVFCLRGN 63
                                69*****99.*******999843...48************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8791370IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-221372IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-311371IPR001471AP2/ERF domain
PfamPF008475.5E-131362IPR001471AP2/ERF domain
SMARTSM003804.3E-351376IPR001471AP2/ERF domain
CDDcd000184.52E-271372No hitNo description
PRINTSPR003677.6E-101425IPR001471AP2/ERF domain
PRINTSPR003677.6E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MVRPIGERDD GGRYKGVRMR KWGKWVAEVR QPNSRGRIWL GSYKTAEEAA RAYDAAVFCL  60
RGNSAKLNFP DNPPDIADAN ELTPDQIKEA AFRHARRDAG EEETEVAATA GDSCAECYFS  120
GGSVGDRSGR AYFHSPGVWT F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1712701372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634090.11e-101PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-35ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0D2UFW41e-84A0A0D2UFW4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JHM41e-84A0A1U8JHM4_GOSHI; ethylene-responsive transcription factor ERF017-like
TrEMBLA0A2P5W3361e-84A0A2P5W336_GOSBA; Uncharacterized protein
STRINGGorai.009G037000.12e-85(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]