PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32626_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 36033.7 Da PI: 6.415 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv+++k+ G g+W++ ++ g++R++k+c++rw +yl Cotton_A_32626_BGI-A2_v1.0 14 KGPWTLEEDQKLVKYIKESGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.6e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l Cotton_A_32626_BGI-A2_v1.0 67 RGKFSQEEEQTILNLHSILGNK-WSAIASRLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.577 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.52E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.279 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.61E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGRSPCCDEN GLKKGPWTLE EDQKLVKYIK ESGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILN LHSILGNKWS AIASRLPGRT DNEIKNFWNT HLRKKLIQMG 120 IDPMTHRPRI DIFSSLPHLI ALANLKELMD QQQPWEEAAQ MAKLQCLQYL LQNPPSLSSP 180 SNNMHTTFTD METMDISNSL LSSPPQLASV QGLDDSNPFS RLPDLQIPCD YRISSSSKDD 240 TAQAQAQAQA QAQAQEHAVL SQGENTCNST WLPSPSAVPS VTETLISNLG DASCSSNFDV 300 AAPSVWLDDH QLFQDPLFHN LL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016687596.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
Refseq | XP_017644394.1 | 0.0 | PREDICTED: myb-related protein 308 | ||||
Swissprot | Q9S9Z2 | 7e-99 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A1U8JBA9 | 0.0 | A0A1U8JBA9_GOSHI; myb-related protein 308-like | ||||
STRING | Gorai.007G236800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 2e-98 | myb domain protein 93 |
Publications ? help Back to Top | |||
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