PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_32585_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 170aa MW: 19861.6 Da PI: 10.2258

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_32585_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.6	2.7e-13	61	118	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ rr+++NRe+ArrsR RK++ +e+L++ v L eN++L ++l l ++ +++++ Cotton_A_32585_BGI-A2_v1.0 61 RKRRRMMSNRESARRSRMRKQKHLENLRNLVNRLRIENRELTSRLGFLLYHCHRVRTD 118 6789*****************************************9888888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.3E-13	57	121	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	59	122	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-10	61	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-10	61	111	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.8E-10	61	134	No hit	No description
CDD	cd14702	4.50E-17	62	113	No hit	No description
PROSITE pattern	PS00036	0	64	79	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MLSTVPTMES LECDWDCSQL FSTIQSVGPA RSGSASSEPN QTHSNSGLDE SNLKLSIIEE 60 RKRRRMMSNR ESARRSRMRK QKHLENLRNL VNRLRIENRE LTSRLGFLLY HCHRVRTDND 120 SLRSEYTVLR QKLSDIQQIL LFKQLQQFSS TWPYNNVPVM SEQTPPPLII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	64	RKRRR
2	60	81	RKRRRMMSNRESARRSRMRKQK
3	73	80	RRSRMRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016728449.1	1e-121	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A1U8MSC9	1e-119	A0A1U8MSC9_GOSHI; basic leucine zipper 43-like
STRING	Gorai.008G085200.1	1e-116	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	4e-18	basic leucine-zipper 5