PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32478_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 452aa    MW: 50079.2 Da    PI: 5.8074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32478_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.56.1e-54321591128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 l+pGfrFhPtdeelv++yLk+kv++k++++ ++++evdiyk+ePwdL   +k++++++ewyfFs  dkky +g r nrat++g
  Cotton_A_32478_BGI-A2_v1.0  32 LAPGFRFHPTDEELVSYYLKRKVSNKPVRF-NAMAEVDIYKHEPWDLSdkAKLQTRDQEWYFFSLLDKKYGNGGRMNRATNQG 113
                                 579************************999.89**************85348888999************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatgkd+ev + +++l+g+kktLvf++grap+g +t+Wvmheyrl
  Cotton_A_32478_BGI-A2_v1.0 114 YWKATGKDREVRH-NTQLIGMKKTLVFHSGRAPDGMRTNWVMHEYRL 159
                                 *************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-6029182IPR003441NAC domain
PROSITE profilePS5100557.71232181IPR003441NAC domain
PfamPF023655.8E-2834159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGGETSLTLV SGPTSPPPSA AAAKTGGSAT ALAPGFRFHP TDEELVSYYL KRKVSNKPVR  60
FNAMAEVDIY KHEPWDLSDK AKLQTRDQEW YFFSLLDKKY GNGGRMNRAT NQGYWKATGK  120
DREVRHNTQL IGMKKTLVFH SGRAPDGMRT NWVMHEYRLA EEELEKIGAL QGYVLCRVFH  180
KNNIGPPNGN RYAPFIEAEW DDGSIPLVLG VDTGDDGVAG NDAIAGNDVA TTENAAVENN  240
ADHMIGSEQV WAETEHAGKD ALPNDEVPRE MLNDKTDDCP PLPPCKVERP DDCPPICMLN  300
REASLPLLRY KRRRHTDLGP NHANASENST RTTQDRCSST TTTAAAATTT SPSSATTTAI  360
SALLEFSLME SLELKENNHR VPPPTFDIAN LDSVVPPSCM KLINELQKEI RKISVERESL  420
KLEMMSAQTM INILHSRIDS LSKENEELKR SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-463218315170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472460.0KC847246.1 Gossypium hirsutum NAC domain protein NAC69 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646601.10.0PREDICTED: NAC domain-containing protein 45-like isoform X1
SwissprotQ9SQY01e-147NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A2P5WEW00.0A0A2P5WEW0_GOSBA; Uncharacterized protein
STRINGGorai.011G234200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.21e-124NAC domain containing protein 52
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]