PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32434_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 31750.8 Da PI: 7.4505 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 132 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f ta+eAa+a+++a+ ++g Cotton_A_32434_BGI-A2_v1.0 132 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAKEAARAYDKAAIDFRG 181 59*******.**********82....48**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.06E-33 | 131 | 189 | No hit | No description |
SMART | SM00380 | 2.8E-36 | 132 | 195 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-13 | 132 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 132 | 190 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.724 | 132 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-32 | 132 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MQKPMKRQRL TPVPPPSVHR LSPEYEISIM VAALKNVVAG YTPTSTSAVS VSAVDIPSDF 60 VSLVTSTVST AGISRDFDDA LFQANEVTDK CHVCRFDGCL GCNLFPPSHQ EDQMVTTTAT 120 TMFSKPKRVK KNYRGVRQRP WGKWAAEIRD PRRAARVWLG TFNTAKEAAR AYDKAAIDFR 180 GPRAKLNFPF PDSTHSDGYV TTSAAAAPTT TTTTSVVVFD QENSGAFNLN IGKESEMRIG 240 SEFWDGMGED EIQEWMKMMT TDFDWDNTNK KYFSDSAMTM GNASSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-23 | 131 | 190 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-23 | 131 | 190 | 4 | 64 | ATERF1 |
3gcc_A | 5e-23 | 131 | 190 | 4 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618866.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A1U8IF78 | 0.0 | A0A1U8IF78_GOSHI; ethylene-responsive transcription factor ERF109-like | ||||
STRING | Gorai.013G043700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5469 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-39 | redox responsive transcription factor 1 |